PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002134.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 592aa MW: 64728.2 Da PI: 8.0445

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002134.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51	2.5e-16	358	404	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Cse_sc002134.1_g040.1 358 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 404 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MPLSELYKNE SSQQKLTDIS YIPNDEFVEL IWEKGQVMMQ GQSSKARKTP VSSNFQFHAP 60 KVQGKDGMLN VPMAEIGLDQ DDDMVPWLNY PLDDYCADLL PEISGVTVHE PTMHNSMSVI 120 DKRGNKDTSL FNGLDQANTS KGLKGSNLFS WPDPVVRSGI TDIGSSNCRS KVNNVVHRDP 180 IHIKGSAGRV EKMAQKQDSS STLLNFSHFS RPAAMAKTNL QNTAVNIVNN GSQKEIGFVS 240 QPNLDSVGVG SNPFVSKPLN EPHSVEKSSN VVLDVNGAKG VQETVKSNEP VVATSSVCSG 300 NSAERASNDF SKNSKRKSRD TEEFECQSQD VDEESLGTKT ASASRGGTGS KRSRAAEVHN 360 LSERRRRDRI NEKMRALQEL IPNCNKVDKA SMLDEAIEYL KTLQLQVQIM SMGSGLCMSP 420 MMFPGGMHPH FSPMGIGMGL GYGIGMGMEM NQQGHPSMFQ FPPNAQGSRH PLPSPTVYGH 480 PSQGMPMLFP QPPMPRVPMH PAARPVDVAP SSKNPMQTKN SHAMTQLSNQ SQDAIKTLNQ 540 SASVDKKGQG LEAACSTAGK LVLIDLSFKR NSECIKNRRV NVALTFFDEF LQ

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MPLSELYKNE SSQQKLTDIS YIPNDEFVEL IWEKGQVMMQ GQSSKARKTP VSSNFQFHAP  60
KVQGKDGMLN VPMAEIGLDQ DDDMVPWLNY PLDDYCADLL PEISGVTVHE PTMHNSMSVI  120
DKRGNKDTSL FNGLDQANTS KGLKGSNLFS WPDPVVRSGI TDIGSSNCRS KVNNVVHRDP  180
IHIKGSAGRV EKMAQKQDSS STLLNFSHFS RPAAMAKTNL QNTAVNIVNN GSQKEIGFVS  240
QPNLDSVGVG SNPFVSKPLN EPHSVEKSSN VVLDVNGAKG VQETVKSNEP VVATSSVCSG  300
NSAERASNDF SKNSKRKSRD TEEFECQSQD VDEESLGTKT ASASRGGTGS KRSRAAEVHN  360
LSERRRRDRI NEKMRALQEL IPNCNKVDKA SMLDEAIEYL KTLQLQVQIM SMGSGLCMSP  420
MMFPGGMHPH FSPMGIGMGL GYGIGMGMEM NQQGHPSMFQ FPPNAQGSRH PLPSPTVYGH  480
PSQGMPMLFP QPPMPRVPMH PAARPVDVAP SSKNPMQTKN SHAMTQLSNQ SQDAIKTLNQ  540
SASVDKKGQG LEAACSTAGK LVLIDLSFKR NSECIKNRRV NVALTFFDEF LQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	363	368	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-70	bHLH family protein