PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001936.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

ZF-HD

Protein Properties

Length: 650aa MW: 72232.5 Da PI: 6.8262

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001936.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.1	1.6e-31	189	243	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY eC+kNhAa++Gg+avDGC+Efm+s geegtaaa+ CaACgCHR+FHRre + Cse_sc001936.1_g060.1 189 NVRYGECQKNHAANIGGYAVDGCREFMAS-GEEGTAAAISCAACGCHRSFHRRELD 243 79************************9.999******************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MNWLPSIMQE ALRSSMEGFI VPALRSSWLD AEHERLERDG LIAYYSEWVT AWKKYTSREA 60 IQKHYKETGE DENTQLIEMF SCQTAREYRV MMGTDYRISR DPLAMRIKEE QIKQSRFLNS 120 LISELFNIFN QIASPITFPP PSSSYPPNLP STINATPPSA SFRVQQVEIV LPAKIGKTGN 180 SLKAQPLINV RYGECQKNHA ANIGGYAVDG CREFMASGEE GTAAAISCAA CGCHRSFHRR 240 ELDEVSVAPP QWTMRNIVDR NRLLLYILNL YKDVSGRLPK VVGIECGRDS SLKENTPIVS 300 KKWSTQDGPA TDVAAKNDMK FTVEKELVSQ ANEEDMEALL GVYVMGIGGA EAFSERLKRE 360 LHALEAVNVH AIFECEPLHQ YPQASYSNDH EYLEKYWDSI AHSRLIMAGG SIFKHLGRYL 420 IGMSHETHAW NPNPTADPLT TIGELVVAGG AVIGRGDVAY GGSLDTLTDK DFPVGQFLST 480 IGLSVMDWHG DLALWWNAQS QISIGRTRNL IGRVNLNYKW SGQVSVRLNS SDQLQIALAA 540 LVPLVRKLIG RVVDARSPLA IVIPARDSCL REPKAIPWTL ATPYKAGADG WCHMDVHKGD 600 IVAWPTNLGW MMGPWLIYAS LINGGSIALY NGSPLGVGFA KFVQVVFINL

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MNWLPSIMQE ALRSSMEGFI VPALRSSWLD AEHERLERDG LIAYYSEWVT AWKKYTSREA  60
IQKHYKETGE DENTQLIEMF SCQTAREYRV MMGTDYRISR DPLAMRIKEE QIKQSRFLNS  120
LISELFNIFN QIASPITFPP PSSSYPPNLP STINATPPSA SFRVQQVEIV LPAKIGKTGN  180
SLKAQPLINV RYGECQKNHA ANIGGYAVDG CREFMASGEE GTAAAISCAA CGCHRSFHRR  240
ELDEVSVAPP QWTMRNIVDR NRLLLYILNL YKDVSGRLPK VVGIECGRDS SLKENTPIVS  300
KKWSTQDGPA TDVAAKNDMK FTVEKELVSQ ANEEDMEALL GVYVMGIGGA EAFSERLKRE  360
LHALEAVNVH AIFECEPLHQ YPQASYSNDH EYLEKYWDSI AHSRLIMAGG SIFKHLGRYL  420
IGMSHETHAW NPNPTADPLT TIGELVVAGG AVIGRGDVAY GGSLDTLTDK DFPVGQFLST  480
IGLSVMDWHG DLALWWNAQS QISIGRTRNL IGRVNLNYKW SGQVSVRLNS SDQLQIALAA  540
LVPLVRKLIG RVVDARSPLA IVIPARDSCL REPKAIPWTL ATPYKAGADG WCHMDVHKGD  600
IVAWPTNLGW MMGPWLIYAS LINGGSIALY NGSPLGVGFA KFVQVVFINL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	1e-30	ZF-HD family protein