PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001935.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YB
Protein Properties Length: 264aa    MW: 28595.7 Da    PI: 8.9536
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001935.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.39.2e-5820115297
                  NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                            reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplkvyl++
  Cse_sc001935.1_g030.1  20 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQR 107
                            89************************************************************************************** PP

                  NF-YB  90 yrelegek 97 
                            +r++egek
  Cse_sc001935.1_g030.1 108 FRDMEGEK 115
                            ******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MADSDNESGG GGHNGDHSLR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF  60
ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP LKVYLQRFRD MEGEKTALAG  120
RGERESGVGG GSGNNNNGSV VNMGNNGGGF HDGNNNGGGV YGNMVGHHQG GGHVYGSGSG  180
GYYQNPSGKM GSVYPGSGSF NGRSRQRVVF AHFVWIDIWF PPLDKKGSPD SKWPTQKAIK  240
PTFHISKIKP SQNNSSILYP SQLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-75NF-YB family protein