PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001907.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 477aa MW: 52295.7 Da PI: 6.792

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001907.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.6e-09	298	345	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cse_sc001907.1_g050.1 298 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 345 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MEKDKYFNNG NGIPQAWNSI FGMGMGMGMQ TSEGFFNQNC ENSVDQRDIF ESALNSIVSS 60 PASSHPGIGP GIPIPEGTGG NESIVLRELI GRLGSICNSG ENNGNNSANN SCYNTPLNSP 120 PKLNLSILDH PIPGNSVPEN TILRNPVPGN HSLPLTQFSS DPGFVERAAR LSCFSGQSFI 180 GINKLSTQVC EESVSTETGM KVQSTNSNVR KRKMVPKGKG KETQSSSTSF SDKDDKVVAE 240 AEKVESDAKR SKSNDEENGN GNEKGGNGNE KQTKENAKPE PPKDYIHVRA RRGQATDSHS 300 LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEV IRIFLSMKLA 360 TVNPRMDVSI ESLLSKDMFR PRVSMPTNMN PFDASTQPFP YAFQPQNNGI VPDVSENQFS 420 VNPLMAAMHR NSMMKPSHID GLGEASTFWE NDLQSVVKMA LGQDQPQGFH GHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MEKDKYFNNG NGIPQAWNSI FGMGMGMGMQ TSEGFFNQNC ENSVDQRDIF ESALNSIVSS  60
PASSHPGIGP GIPIPEGTGG NESIVLRELI GRLGSICNSG ENNGNNSANN SCYNTPLNSP  120
PKLNLSILDH PIPGNSVPEN TILRNPVPGN HSLPLTQFSS DPGFVERAAR LSCFSGQSFI  180
GINKLSTQVC EESVSTETGM KVQSTNSNVR KRKMVPKGKG KETQSSSTSF SDKDDKVVAE  240
AEKVESDAKR SKSNDEENGN GNEKGGNGNE KQTKENAKPE PPKDYIHVRA RRGQATDSHS  300
LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEV IRIFLSMKLA  360
TVNPRMDVSI ESLLSKDMFR PRVSMPTNMN PFDASTQPFP YAFQPQNNGI VPDVSENQFS  420
VNPLMAAMHR NSMMKPSHID GLGEASTFWE NDLQSVVKMA LGQDQPQGFH GHMKVEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-71	bHLH family protein