PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001906.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 771aa MW: 89419.5 Da PI: 9.664

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001906.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26	3e-08	108	161	37	90
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 keg++ k ++ + r+++++r++Cka l+vk + + + +++++ HnH+l+ Cse_sc001906.1_g050.1 108 KEGTNPAPKVGAKPNTRKHPSKRIDCKAVLRVKYIEGKGYWCYEFVEGHNHSLV 161 56666666666789999*****************999999********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence
MQKTSSKNVK TSFSEVQRKS KKFPDNTIGK STKKRVRRYK LSRKNSPTIP LERARKNESE 60 DNDYEPVPYS VGIVSEEAGQ KIWVPDIPAG EKPAYGMMYH SLEQAYDKEG TNPAPKVGAK 120 PNTRKHPSKR IDCKAVLRVK YIEGKGYWCY EFVEGHNHSL VSEEDTIYGD YEFLGASSVD 180 CKNYRRDVLD FIGKNDAQML VDMLMSKKDF LPNFSFEYET GENNALTNLF WADEYAKRNY 240 YAFGDVMSFD ATFRTNKYKM VFVPFTGIDN HNHCVTFGAA LLSSETKESY IWLLQCFKRA 300 FVRAPKVIVT DQDGSMKVAI DTVFLLSRHR LCMSHIMQKL TSKVGPVLAK DPTFKKRISD 360 IVWTDRIEPE KFEELWEHLL IDFDLKSHKW LSDMYNLRHK WIPAYYRDEL MAGLMRTSSR 420 SESEINAYGR LTSIDLTLWE FYNHFDSVVG CQRFAQRKND HDSRYTVPDM HTELELEKEA 480 SELYTRSIFF DVQTEIYAYV ILCMSVSVMD VDSGKKYVIQ DTGEDEQISR RHRQVEGVVN 540 EVFYEVLCKP TEDSYECSCK RFESYGLLCR HIFYVLRFSK VKKFPKKYVL RRWTKDSLPP 600 PSVIQATGDS PYMILREIFR SVEYCVNRYA NDPKLLQKFR DNQVQLMAKA NADVPIPKKT 660 NKRDRLASIL GVSQPEETIV NIPKKVSTKG SRKRIKGSVE RSVNPSGKRR KNCRFCKCSM 720 KDHDQAKRNA IRAQIDAKKA SDKAAVKERK QKARLAAKKL KFSEKNACVV S

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence

MQKTSSKNVK TSFSEVQRKS KKFPDNTIGK STKKRVRRYK LSRKNSPTIP LERARKNESE  60
DNDYEPVPYS VGIVSEEAGQ KIWVPDIPAG EKPAYGMMYH SLEQAYDKEG TNPAPKVGAK  120
PNTRKHPSKR IDCKAVLRVK YIEGKGYWCY EFVEGHNHSL VSEEDTIYGD YEFLGASSVD  180
CKNYRRDVLD FIGKNDAQML VDMLMSKKDF LPNFSFEYET GENNALTNLF WADEYAKRNY  240
YAFGDVMSFD ATFRTNKYKM VFVPFTGIDN HNHCVTFGAA LLSSETKESY IWLLQCFKRA  300
FVRAPKVIVT DQDGSMKVAI DTVFLLSRHR LCMSHIMQKL TSKVGPVLAK DPTFKKRISD  360
IVWTDRIEPE KFEELWEHLL IDFDLKSHKW LSDMYNLRHK WIPAYYRDEL MAGLMRTSSR  420
SESEINAYGR LTSIDLTLWE FYNHFDSVVG CQRFAQRKND HDSRYTVPDM HTELELEKEA  480
SELYTRSIFF DVQTEIYAYV ILCMSVSVMD VDSGKKYVIQ DTGEDEQISR RHRQVEGVVN  540
EVFYEVLCKP TEDSYECSCK RFESYGLLCR HIFYVLRFSK VKKFPKKYVL RRWTKDSLPP  600
PSVIQATGDS PYMILREIFR SVEYCVNRYA NDPKLLQKFR DNQVQLMAKA NADVPIPKKT  660
NKRDRLASIL GVSQPEETIV NIPKKVSTKG SRKRIKGSVE RSVNPSGKRR KNCRFCKCSM  720
KDHDQAKRNA IRAQIDAKKA SDKAAVKERK QKARLAAKKL KFSEKNACVV S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	657	663	PKKTNKR
2	692	711	RKRIKGSVERSVNPSGKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-73	FAR1 family protein