PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001834.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 437aa MW: 49211.2 Da PI: 8.3289

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001834.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.9	1.1e-15	124	219	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 Y +YA+++ F vrks +k+ r+g ++++ +vC++eg ++ + ++k++r+++ + tgCka+++ ++ + k+++t ++ Cse_sc001834.1_g040.1 124 VYMKYASKARFVVRKSCQKRL-RSGIVKQKYLVCNREGCPKGIHVGtldlenSDKHKRSSNMHITGCKARVMFELIPgSTKYKLTVFD 210 69***********998887.8898*********998777678888888999999999**********9****** PP FAR1 83 leHnHelap 91 + HnHel p Cse_sc001834.1_g040.1 211 SIHNHELEP 219 ****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MDSIPNSSVS SDRSSSITEP ATESDRSSSI TENVVVSITE SATEDNVVSD DVSAKYTEEI 60 VAYEHGDESA AIKKLNALKT PESFSTHSNF DTLGGTVYYI PKVPVNVLLA KGNVFNSVDE 120 CISVYMKYAS KARFVVRKSC QKRLRSGIVK QKYLVCNREG CPKGIHVGTL DLENSDKHKR 180 SSNMHITGCK ARVMFELIPG STKYKLTVFD SIHNHELEPA SVNIGATRAH HLLTGLKGSY 240 LLVHGTTVDF KNFFRSVNCY IGDSDAQMLI AKMENSQKHV PYFLFDYLVE NAELSAIFWA 300 DEVSKYNYKE FCDVLSFDAT YRTNKYKMMF VPFTAIDNHR KCVTVVAGLL KNETTNCYIW 360 LLKAFIKAFG KAPSIVVTDQ DGAMRKAIEQ EFAGSKHRLC MWHITQKLPG KICSNIYDHT 420 DFKRKFNQIV WNMYIGP

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MDSIPNSSVS SDRSSSITEP ATESDRSSSI TENVVVSITE SATEDNVVSD DVSAKYTEEI  60
VAYEHGDESA AIKKLNALKT PESFSTHSNF DTLGGTVYYI PKVPVNVLLA KGNVFNSVDE  120
CISVYMKYAS KARFVVRKSC QKRLRSGIVK QKYLVCNREG CPKGIHVGTL DLENSDKHKR  180
SSNMHITGCK ARVMFELIPG STKYKLTVFD SIHNHELEPA SVNIGATRAH HLLTGLKGSY  240
LLVHGTTVDF KNFFRSVNCY IGDSDAQMLI AKMENSQKHV PYFLFDYLVE NAELSAIFWA  300
DEVSKYNYKE FCDVLSFDAT YRTNKYKMMF VPFTAIDNHR KCVTVVAGLL KNETTNCYIW  360
LLKAFIKAFG KAPSIVVTDQ DGAMRKAIEQ EFAGSKHRLC MWHITQKLPG KICSNIYDHT  420
DFKRKFNQIV WNMYIGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-35	FAR1 family protein