PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001804.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | C2H2 | ||||||||
Protein Properties | Length: 247aa MW: 26491.7 Da PI: 9.2623 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++sF++ L H r+H Cse_sc001804.1_g040.1 154 HECSICHRSFPTGQALGGHKRRH 176 78*******************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MAVEALNSPT TATTPLFRQE SMKYLESWTK GKRSKRPRVE QPPSEEEYLA FCLMLLARGG 60 RSDDISGAFT KTAEAPLKSN VAVAPKQQAQ LQHQHFVHKC TVCDKTFGSY QALGGHKASH 120 RKNNPGAEIE HSAAATTTSS ASGTHGGVGS GRSHECSICH RSFPTGQALG GHKRRHYEGV 180 IGGGKAASGI TSSEGVGSTN SQRGFDLNLP AMPEFISGFA EEEVESPHPA KRSRLFPGIK 240 LEIPTQH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 4e-57 | C2H2 family protein |