PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001677.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family BBR-BPC
Protein Properties Length: 296aa    MW: 34193.7 Da    PI: 10.2406
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001677.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind308.32.7e-9412961301
              GAGA_bind   1 mdddgsre..rnkg.yye...............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaer 70 
                            mdd+g++e  r++  yy+               ++++ + +++ + m ++aer ++i+er+ als+kkaa+ erdma +qrd+a+aer
  Cse_sc001677.1_g050.1   1 MDDNGHHEvvRHRIdYYKevhpqwnmmpqyqmkDQNQNAIQMNRKFMHIVAERKTAIEERDRALSQKKAALEERDMAIQQRDAAIAER 88 
                            999**99999999989999********9888763344555699********************************************* PP

              GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk 158
                            n+a+ er+n+++al ++e +   ++p+ +   +g+k ++++++        ++  +re + +ea+p++  + e  +       +++ +
  Cse_sc001677.1_g050.1  89 NDAIRERNNAIAALHFHEAT---MNPQPQ---RGAKRTHHHHT--------QPSYMREPRVTEAFPLTAVQAEPVN-------RSKLT 155
                            ****************9987...455554...55566665555........3344577777778886553322222.......22233 PP

              GAGA_bind 159 pkekkak.kkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
                            +ke+k++ k+kk +e+ +++v++++    skae++ +++  ++++s+D+ t+P+P+CsCtG+ rqCYkWG+GGWqS+CCtttiSvyPL
  Cse_sc001677.1_g050.1 156 TKETKSRkKQKKVGEDLNRNVTTDG----SKAEWDAQEFgLVEQISFDQRTMPIPICSCTGVARQCYKWGSGGWQSSCCTTTISVYPL 239
                            3333333155666777888888777....89********4469********************************************* PP

              GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            P+++++r++R++grKmS+++f++lL++La++G+dls p+DL+++WAkHGtn+++ti+
  Cse_sc001677.1_g050.1 240 PQMPNKRHSRMGGRKMSGSVFTRLLSRLASQGHDLSSPIDLRTYWAKHGTNRYITIK 296
                            ********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MDDNGHHEVV RHRIDYYKEV HPQWNMMPQY QMKDQNQNAI QMNRKFMHIV AERKTAIEER  60
DRALSQKKAA LEERDMAIQQ RDAAIAERND AIRERNNAIA ALHFHEATMN PQPQRGAKRT  120
HHHHTQPSYM REPRVTEAFP LTAVQAEPVN RSKLTTKETK SRKKQKKVGE DLNRNVTTDG  180
SKAEWDAQEF GLVEQISFDQ RTMPIPICSC TGVARQCYKW GSGGWQSSCC TTTISVYPLP  240
QMPNKRHSRM GGRKMSGSVF TRLLSRLASQ GHDLSSPIDL RTYWAKHGTN RYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-111BBR-BPC family protein