PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001525.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 260aa    MW: 29360.1 Da    PI: 10.3111
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001525.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.6e-181050242
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Cse_sc001525.1_g050.1 10 FITNDSARKATFKKRKKGLMKKVNELSTLCGIDACAIIYSP 50
                           89**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVNELSTLCG IDACAIIYSP YEAQPEVWPS  60
NIGVQRVLAQ FKRMPEMEQS KKMVNQESFI RQRITKANEQ LKKQIKENRE KEMIEVMYQC  120
LTGKGSITNL ILPDLNDLGG LVDQTMKDIN RRIESLKKTV PGKAVAAPPP PSLPSRPQAP  180
VGANTLSSNN DMMARGLVMH GLEKRHVVHN SSAMDGMQRT PWFTDWMTNP SDHNLGLGPG  240
YELTPFVDNG NQIWPHPYFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-67M-type_MADS family protein