PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001488.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 766aa MW: 87931.2 Da PI: 7.1025

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001488.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.2e-17	51	124	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y Y+ + GF+vr+ + ++s+++g++t+r++vCskeg++++ rtgC a +kv+k ++gkwe+ ++++eHnH+l Cse_sc001488.1_g020.1 51 LYTLYGIQNGFTVRIGQLYRSRTDGSVTSRRYVCSKEGFQTN--------------MRTGCPAFIKVNKLDSGKWELVTIKTEHNHDL 124 6999*********************************976..............589*************************98 PP
2	FAR1	64.5	2.8e-20	200	275	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfY +YA ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r gC a ++++++++gkw+v+++ ++HnHe Cse_sc001488.1_g020.1 200 KFYLTYAANTGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRLGCGAFMRIQRHESGKWVVDRFWNDHNHE 273 6************************************9998..............4799************************* PP FAR1 89 la 90 l Cse_sc001488.1_g020.1 274 LD 275 96 PP

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence
MNRQDLGSTM TLRARPLAML KPNGQREDDE DSSIKLFVGL EFDSAEAAQS LYTLYGIQNG 60 FTVRIGQLYR SRTDGSVTSR RYVCSKEGFQ TNMRTGCPAF IKVNKLDSGK WELVTIKTEH 120 NHDLDVSGEV PSPITQRKAT LTPKSAPVVS SRTGIRSFED DDDPSSAIDL KRLKREELET 180 EPVGEPYKDL YFTCATDAYK FYLTYAANTG FKVRIGQLFR SKNDGSITSR RFVCSKEGHQ 240 HPSRLGCGAF MRIQRHESGK WVVDRFWNDH NHELDSPEDP SQKIASAAKS LKEEISSGLE 300 SLDLVETNGG LSLVIRERRS GIESQLYDIL LKYFQTRQAE DTGFFYALEV DNGRCMSVFW 360 ADGRSRFACT QFGDAIVFDT SYRRGSYTIP FASFFGINHH RQPVLLGCAL ISDESEDSFT 420 WVFEAWLRAM SGRRPVSIIA DQDKPIQNSI AQVFPGTHHR FSPSQILAKE HENLGALRSM 480 EEFKFEYETC ISQSQTASEF DSAWSVLVNN YNLQENTWLK EMYRMRKSWV PFYLRGTFFA 540 GIPVEGNFKS YFGTFITPEV PLFEFITRYE KAMEHHREEE RKEDFNSCNL QPVLHTKDPL 600 EEQCRKLYTI AMFKIFQKEL LESYSYVGIK INIEGAISRY LVQRCGNGDE RNTVAFNASN 660 LNVSCSCRMF EFEGILCRHA LKVFQVMNIR EIPSRYILHR WSKNAKYGNL RDVDSAGRSQ 720 DLKALMVWSL REEAHSYIDA GSASLERYKL AFEILQEGRR NVCWQN

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence

MNRQDLGSTM TLRARPLAML KPNGQREDDE DSSIKLFVGL EFDSAEAAQS LYTLYGIQNG  60
FTVRIGQLYR SRTDGSVTSR RYVCSKEGFQ TNMRTGCPAF IKVNKLDSGK WELVTIKTEH  120
NHDLDVSGEV PSPITQRKAT LTPKSAPVVS SRTGIRSFED DDDPSSAIDL KRLKREELET  180
EPVGEPYKDL YFTCATDAYK FYLTYAANTG FKVRIGQLFR SKNDGSITSR RFVCSKEGHQ  240
HPSRLGCGAF MRIQRHESGK WVVDRFWNDH NHELDSPEDP SQKIASAAKS LKEEISSGLE  300
SLDLVETNGG LSLVIRERRS GIESQLYDIL LKYFQTRQAE DTGFFYALEV DNGRCMSVFW  360
ADGRSRFACT QFGDAIVFDT SYRRGSYTIP FASFFGINHH RQPVLLGCAL ISDESEDSFT  420
WVFEAWLRAM SGRRPVSIIA DQDKPIQNSI AQVFPGTHHR FSPSQILAKE HENLGALRSM  480
EEFKFEYETC ISQSQTASEF DSAWSVLVNN YNLQENTWLK EMYRMRKSWV PFYLRGTFFA  540
GIPVEGNFKS YFGTFITPEV PLFEFITRYE KAMEHHREEE RKEDFNSCNL QPVLHTKDPL  600
EEQCRKLYTI AMFKIFQKEL LESYSYVGIK INIEGAISRY LVQRCGNGDE RNTVAFNASN  660
LNVSCSCRMF EFEGILCRHA LKVFQVMNIR EIPSRYILHR WSKNAKYGNL RDVDSAGRSQ  720
DLKALMVWSL REEAHSYIDA GSASLERYKL AFEILQEGRR NVCWQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1 family protein