PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001459.1_g180.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARR-B
Protein Properties Length: 421aa    MW: 47801.9 Da    PI: 4.4894
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001459.1_g180.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.54e-25188241155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k r++Wt+eLH +Fv av++L G+++A+Pk+ilelm+v+gL ++ v+SHLQkYR 
  Cse_sc001459.1_g180.1 188 KHRMVWTQELHYQFVVAVKHL-GIQNAVPKKILELMNVPGLRRACVASHLQKYRK 241
                            68*******************.9*******************************6 PP
2Myb_DNA-binding30.96.1e-10190240148
                            TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                            r+ WT+e++ ++v avk lG     +k+I + m+  g+ +  + s++qky+
  Cse_sc001459.1_g180.1 190 RMVWTQELHYQFVVAVKHLGIQnaVPKKILELMNvPGLRRACVASHLQKYR 240
                            789******************999**************************7 PP
3Response_reg35.93.8e-13241261106
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeed 85 
                            vl+vd +p+ +  l+++l++ +y +v+++  + eal+l+++    +D++++ ++ +  ++G+e+l+ i +e   lp++    +++ ++
  Cse_sc001459.1_g180.1  24 VLVVDNDPDSLLYLTEMLTSCQY-QVTTCPLPAEALQLINDDSnkFDIVITEVQFSPdINGVEFLEIIVRET-GLPVV----NDSIDT 105
                            89*********************.***************666666*********7544**********6666.79998....666999 PP

                            HHHHHHTTESEEEESS--HHH CS
           Response_reg  86 alealkaGakdflsKpfdpee 106
                            + e++  Ga  ++ Kp ++e 
  Cse_sc001459.1_g180.1 106 IMECILKGACICIPKPAKKEV 126
                            ****************77665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    
MSSSENSLME PLSIEDFNPH GLKVLVVDND PDSLLYLTEM LTSCQYQVTT CPLPAEALQL  60
INDDSNKFDI VITEVQFSPD INGVEFLEII VRETGLPVVN DSIDTIMECI LKGACICIPK  120
PAKKEVIKPI WQHVARRLLR HNLMKPIDKL EVNEPSSCTS VEDKELCGSS DSDGVQTDDD  180
QTKDQAKKHR MVWTQELHYQ FVVAVKHLGI QNAVPKKILE LMNVPGLRRA CVASHLQKYR  240
KNLQRLSTNT PHRFTEQSSI IQVSGDTYSQ VFEDNNSFIS TQQFFTEQDF NGQVPIGANN  300
QMMENNSLFI RNSPITELQQ HFTVQDSSIQ VPSGANSHMM ENNDLFIRNS PITEMQQNFT  360
VQDSSTEVPS GAYHPVIEKE DWEKDWPFLR IPPITDAELQ MLESELDNHF SFSMTENTPL  420
N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-45ARR-B family protein