PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001306.1_g110.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 646aa MW: 73633.9 Da PI: 9.1094

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001306.1_g110.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.8e-07	464	505	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W +eE ell ++ +++++g +W+ I++++g+gR+ +++ Cse_sc001306.1_g110.1 464 KPWGKEEIELLRKGTAKYPKGtsrRWEVISEYIGTGRSVEEI 505 68***********************************99876 PP
2	Myb_DNA-binding	26.5	1.5e-08	591	634	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ + lv+a k ++++ +W+++a+ ++ g+t +qck + Cse_sc001306.1_g110.1 591 VWSAVQETALVQALKTFPKEtnqRWERVAAAVP-GKTVNQCKKQF 634 6******************************.******877 PP

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence
MASRSSILRI TYSNELVNGE TVYVSSNSLP IKASHFEPAG HSFHDIALKL RGYYEEESLS 60 DDNENLPKDK EYDYMQSSGA YSSSKGKKKN ADGKIQQDHY ALLGLGNLRY LATEEQIRKS 120 YRETALKHHP DKQAALLLGE ATEAAKEAKK DEIENHFKAI QEAYELLMDP VRRRIYDSTD 180 EFDDEIPTDC SPQDFFKVFG PAFMRNGRWS VNQPAPMLGD DNTPLKVVDA FYDFWFSFKS 240 WREFPSDEDF DLEQAESRDH RRWMERQNAK NSEKARKDEH ARIRTLVDNA YKRDPRIIKL 300 KEMMKAEKQK KKEAKYMVKK QQEEEAARIA EENRRKKEEE EKQAAEAASN QKKLKEKEKK 360 LLRKERTRLR ALSTHVVANN LLNITQEDVE NICLSFDMLQ LQTLCENMEG KGKDSRSQAE 420 LLKEAINSDN IEKDRAVDNS QQNGSVKPKV NGTISTSNFE KKPKPWGKEE IELLRKGTAK 480 YPKGTSRRWE VISEYIGTGR SVEEILKATK TVLLQKPDSS KAFDTFLDKR KPTVSIASPL 540 TTREEVVGVP VGASSTSTPT ATSAQPDAVP PKPSESAVKV EAAVSSSDQD VWSAVQETAL 600 VQALKTFPKE TNQRWERVAA AVPGKTVNQC KKQFILLKEK FRSNKK

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence

MASRSSILRI TYSNELVNGE TVYVSSNSLP IKASHFEPAG HSFHDIALKL RGYYEEESLS  60
DDNENLPKDK EYDYMQSSGA YSSSKGKKKN ADGKIQQDHY ALLGLGNLRY LATEEQIRKS  120
YRETALKHHP DKQAALLLGE ATEAAKEAKK DEIENHFKAI QEAYELLMDP VRRRIYDSTD  180
EFDDEIPTDC SPQDFFKVFG PAFMRNGRWS VNQPAPMLGD DNTPLKVVDA FYDFWFSFKS  240
WREFPSDEDF DLEQAESRDH RRWMERQNAK NSEKARKDEH ARIRTLVDNA YKRDPRIIKL  300
KEMMKAEKQK KKEAKYMVKK QQEEEAARIA EENRRKKEEE EKQAAEAASN QKKLKEKEKK  360
LLRKERTRLR ALSTHVVANN LLNITQEDVE NICLSFDMLQ LQTLCENMEG KGKDSRSQAE  420
LLKEAINSDN IEKDRAVDNS QQNGSVKPKV NGTISTSNFE KKPKPWGKEE IELLRKGTAK  480
YPKGTSRRWE VISEYIGTGR SVEEILKATK TVLLQKPDSS KAFDTFLDKR KPTVSIASPL  540
TTREEVVGVP VGASSTSTPT ATSAQPDAVP PKPSESAVKV EAAVSSSDQD VWSAVQETAL  600
VQALKTFPKE TNQRWERVAA AVPGKTVNQC KKQFILLKEK FRSNKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	355	RRKKEEEEKQAAEAASNQKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	1e-123	MYB family protein