PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001280.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YC
Protein Properties Length: 279aa    MW: 31094.6 Da    PI: 6.5108
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001280.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.94.6e-56821851101
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+tr
  Cse_sc001280.1_g050.1  82 QLQNFWANQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169
                            89******9999**************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdel 101
                            tdifdflvdivpr++l
  Cse_sc001280.1_g050.1 170 TDIFDFLVDIVPREDL 185
                            *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MDQQGHGQAS GMGAVGSSAQ MPYNMAPYPP NQMMGIVPPA SVGGSVQPSQ TSGLTSPPAQ  60
LAQQQLAYQH IHQQQQQQLH QQLQNFWANQ YQEIEQTTDF KNHSLPLARI KKIMKADEDV  120
RMISAEAPVI FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV  180
PREDLKDEII ASTVPRGGPL PVGAPTEGLP YYYMPPPQVG ASGMYMGKPV DPQALYGQQP  240
RPYMAQPMRF TKDQILKMVA VDEYSLLGIC IKVQFACGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.33e-78NF-YC family protein