PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001261.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | WRKY | ||||||||
Protein Properties | Length: 240aa MW: 27457.6 Da PI: 7.5269 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.5 | 2.4e-27 | 160 | 218 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K++k ++ pr+Y++C++ gC+vkk+ver+++d ++++ tY g Hnh+ Cse_sc001261.1_g030.1 160 LDDGYRWRKYGKKKIKCTPSPRNYFKCSTMGCKVKKRVERDRDDSSYIIATYIGLHNHD 218 59********************************************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
METCLNLSKL AQKSTMDAFL PLSDQDQTGN PKFSSSSFNC PFITNDDRVY DHTNVDNTLY 60 YNHNLTDSNP NNLSLIDHQD SSSSNSLSYL NTNEQTPDHL LEITRDVNIS KSPQISADAA 120 SMTQLTWIER QLLYDDNSNR ERMHYGAKIG FRIRTALEVL DDGYRWRKYG KKKIKCTPSP 180 RNYFKCSTMG CKVKKRVERD RDDSSYIIAT YIGLHNHDVP STTASMSHTC PTGVWKLQYS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 4e-32 | WRKY family protein |