PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001258.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 544aa MW: 60311.5 Da PI: 4.8343

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001258.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.3e-18	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l Cse_sc001258.1_g060.1 35 KGPWTSAEDAILVDYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 82 79******************************************9986 PP
2	Myb_DNA-binding	49.4	1e-15	88	131	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a +++ gRt++++k++w++ Cse_sc001258.1_g060.1 88 KGAFTPEEERRIIELHAKMGNK-WARMAVELP-GRTDNEIKNFWNT 131 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MSNMTTSESE DRVDSPTIDE EASTERNIMM GTLKKGPWTS AEDAILVDYV NKHGEGNWNA 60 VQKHSGLSRC GKSCRLRWAN HLRPDLKKGA FTPEEERRII ELHAKMGNKW ARMAVELPGR 120 TDNEIKNFWN TRTKRKQRAG QPIYPPDVCL QTLNNNTQSQ NMVTFTNGDA SHSEILQNNT 180 FQIPAVEFKN LELNRELYVP NILDLPGGSF LDLPGSSFLP QGLGSTSNNN FLFPMVHPPK 240 RIRRSDTYPF FNGRDGGLDD IFPAANQSFE ISSYNQNLNG NISSSSSCLF SGSHAYINGN 300 TSSSEPISWA QKLELPSLQY STQMGSCNAP SSPLPSLESV DTLIQSTLLG QTKSDSPSPR 360 ASGLLEAVLL QSQNMKMSKS NNDSIASPVP HDITDSSSQN LQEDDWEAYG DPMSPLGHSA 420 ASVFSEYTPL VSGSSLDEHQ SVETISVKNE AEESGVKQSD REDEKPNRID FSRPDYLLGS 480 NWFGSASNAD RNRDQSMVSD PIRALLGDDF CSEFKHISSS PFQVHYESDK WDDISEICRG 540 SANR

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MSNMTTSESE DRVDSPTIDE EASTERNIMM GTLKKGPWTS AEDAILVDYV NKHGEGNWNA  60
VQKHSGLSRC GKSCRLRWAN HLRPDLKKGA FTPEEERRII ELHAKMGNKW ARMAVELPGR  120
TDNEIKNFWN TRTKRKQRAG QPIYPPDVCL QTLNNNTQSQ NMVTFTNGDA SHSEILQNNT  180
FQIPAVEFKN LELNRELYVP NILDLPGGSF LDLPGSSFLP QGLGSTSNNN FLFPMVHPPK  240
RIRRSDTYPF FNGRDGGLDD IFPAANQSFE ISSYNQNLNG NISSSSSCLF SGSHAYINGN  300
TSSSEPISWA QKLELPSLQY STQMGSCNAP SSPLPSLESV DTLIQSTLLG QTKSDSPSPR  360
ASGLLEAVLL QSQNMKMSKS NNDSIASPVP HDITDSSSQN LQEDDWEAYG DPMSPLGHSA  420
ASVFSEYTPL VSGSSLDEHQ SVETISVKNE AEESGVKQSD REDEKPNRID FSRPDYLLGS  480
NWFGSASNAD RNRDQSMVSD PIRALLGDDF CSEFKHISSS PFQVHYESDK WDDISEICRG  540
SANR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	138	RTKRKQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	6e-82	MYB family protein