PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001256.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 382aa MW: 43314.3 Da PI: 7.8635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001256.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.6	3.8e-07	16	63	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 +++Er+RR++++ +++L +l+P + sk + ++ + +A+eYI++ Cse_sc001256.1_g050.1 16 ERKIIERNRRNQMKFLYSNLFSLIPLnL---FSKDGDVSDRVDRAIEYIQM 63 5689********************77...8999************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MKGSIKCSTS RLKKPERKII ERNRRNQMKF LYSNLFSLIP LNLFSKDGDV SDRVDRAIEY 60 IQMSKTNLDM LKNKREKLSS RKRSHEQTKM INNVYKPVDI QIHEISHDID VVLVTGLNNH 120 SSFCDVVCLL NWYSAEVTQA NFSSNGHSTF HIHKKKVIVN RHMHLHSIEG QDICKRLKSL 180 LEGSLNVKKL ENNHALFSLP VTLPQPALDT GIESAPQRIE ESQINLQKEL NSQSCNELEY 240 DSNLSIWDLD FQSNVWITCN ELDYESNLSD ELSSVDGRKK MIRVAWLSSI TDGIDQGQFP 300 SLLNAYGSPS PSSLAEKLCV IERQMAEGKL VLAGDDGKPL KPTRTTHKVS SSHDDALLEK 360 QQVNNKSNDG LEGDMILIKR LG

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MKGSIKCSTS RLKKPERKII ERNRRNQMKF LYSNLFSLIP LNLFSKDGDV SDRVDRAIEY  60
IQMSKTNLDM LKNKREKLSS RKRSHEQTKM INNVYKPVDI QIHEISHDID VVLVTGLNNH  120
SSFCDVVCLL NWYSAEVTQA NFSSNGHSTF HIHKKKVIVN RHMHLHSIEG QDICKRLKSL  180
LEGSLNVKKL ENNHALFSLP VTLPQPALDT GIESAPQRIE ESQINLQKEL NSQSCNELEY  240
DSNLSIWDLD FQSNVWITCN ELDYESNLSD ELSSVDGRKK MIRVAWLSSI TDGIDQGQFP  300
SLLNAYGSPS PSSLAEKLCV IERQMAEGKL VLAGDDGKPL KPTRTTHKVS SSHDDALLEK  360
QQVNNKSNDG LEGDMILIKR LG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-12	bHLH family protein