PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001248.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 455aa MW: 49893.8 Da PI: 10.0631

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001248.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	202	223	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cg+ F r++ L+ H + H Cse_sc001248.1_g010.1 202 CHKCGEQFMRWEALEFHHLLkH 223 *****************98877 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MPTVWFALRK SLHCQSGPSD VHDPNFPRKN LSKIVTKTKK SPTSAGGKSG CSRSLANLKD 60 VIHGSKRHME EKPSTMATTT NASPRSIGSS ELLNPIAHEV VLSNSNCELK IRGFGSLQDG 120 NGGVGDDEGL SSRFEGTIKP GTPGPHHYHH YKPTRSPMTN QRNPNGVSRV GRGLGSGSGA 180 INPAKARASF DGDGHGILSS ACHKCGEQFM RWEALEFHHL LKHAVTELIE GDSSRKIVEL 240 IYKTSWSKSH ANSGGIERIL KVHNMQRTLS EFEEHRESVK TKASKLQKKH PRCLADGNEL 300 LRFHGTLVEC NLGLNGSSSL CQSNNCNVCQ ILRHGFSFKK NGNNKNEVGG IFTTSTSQRA 360 FEAINANNAS SHRKALIVCR VIAGRVHKPL ENIQELANQS GFDSLAGKVG IYSNIEELYL 420 LNPKSLLPCF VIICKPQIYK IVFVPFIAID KRIFF

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MPTVWFALRK SLHCQSGPSD VHDPNFPRKN LSKIVTKTKK SPTSAGGKSG CSRSLANLKD  60
VIHGSKRHME EKPSTMATTT NASPRSIGSS ELLNPIAHEV VLSNSNCELK IRGFGSLQDG  120
NGGVGDDEGL SSRFEGTIKP GTPGPHHYHH YKPTRSPMTN QRNPNGVSRV GRGLGSGSGA  180
INPAKARASF DGDGHGILSS ACHKCGEQFM RWEALEFHHL LKHAVTELIE GDSSRKIVEL  240
IYKTSWSKSH ANSGGIERIL KVHNMQRTLS EFEEHRESVK TKASKLQKKH PRCLADGNEL  300
LRFHGTLVEC NLGLNGSSSL CQSNNCNVCQ ILRHGFSFKK NGNNKNEVGG IFTTSTSQRA  360
FEAINANNAS SHRKALIVCR VIAGRVHKPL ENIQELANQS GFDSLAGKVG IYSNIEELYL  420
LNPKSLLPCF VIICKPQIYK IVFVPFIAID KRIFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-139	C2H2 family protein