PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001246.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

BBR-BPC

Protein Properties

Length: 386aa MW: 43564.1 Da PI: 7.7034

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001246.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	40.5	9.8e-13	166	240	1	74
GAGA_bind 1 mdddgsrernkgyye......pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkal 74 mdd+g++ r+ g + ++ +s+k q+m+++aer+a i+ernla+sekk a+aerd+a+lqrd+ +aernk+ Cse_sc001246.1_g040.1 166 MDDNGHH-REDGRQKqlrwlmQHqPSMK-----QIMTIMAERNATIQERNLAMSEKKTALAERDIALLQRDSPIAERNKSK 240 8888875.55553331112223335555.....*******************************************99875 PP
2	GAGA_bind	29.2	2.7e-09	244	305	157	212
GAGA_bind 157 kkpkekkakkkkkksekskkkvkkesader.......skaekksidlvlngvslDestlPvPv 212 +++k+++++k+k + ++ +k +s+d k+e+k++dl+ln+v++D++t+P+Pv Cse_sc001246.1_g040.1 244 ATKKTSRSRKVKLECDDLNKVLYDDSHD-WdsgdggsNKQEWKDQDLGLNQVTYDDTTMPMPV 305 3344444445554444444433333333.034666669************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MRSQPLDVGL LSTPRASRGF AHEQERAGGE LTTFYFFDED GSAYITKDEL QEAGNKFLTD 60 RALRGFGHGS LDTRVAIGFA LDKAHGMKCL NAYRIIHRDL TPVIHYNNTS AESVFMLKEK 120 GAIAAKQQAK GSSTYVPAKV AARFSNRTCS ASAQSDEHVK TFVFQMDDNG HHREDGRQKQ 180 LRWLMQHQPS MKQIMTIMAE RNATIQERNL AMSEKKTALA ERDIALLQRD SPIAERNKSK 240 TITATKKTSR SRKVKLECDD LNKVLYDDSH DWDSGDGGSN KQEWKDQDLG LNQVTYDDTT 300 MPMPVADDSK NIQFVSSLFN LEARWPKERL EKTAQLETEL TRPLPLGEVV MVTPWMTIGQ 360 LREKAHSALR DTYCLMDHFV VSQTGG

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MRSQPLDVGL LSTPRASRGF AHEQERAGGE LTTFYFFDED GSAYITKDEL QEAGNKFLTD  60
RALRGFGHGS LDTRVAIGFA LDKAHGMKCL NAYRIIHRDL TPVIHYNNTS AESVFMLKEK  120
GAIAAKQQAK GSSTYVPAKV AARFSNRTCS ASAQSDEHVK TFVFQMDDNG HHREDGRQKQ  180
LRWLMQHQPS MKQIMTIMAE RNATIQERNL AMSEKKTALA ERDIALLQRD SPIAERNKSK  240
TITATKKTSR SRKVKLECDD LNKVLYDDSH DWDSGDGGSN KQEWKDQDLG LNQVTYDDTT  300
MPMPVADDSK NIQFVSSLFN LEARWPKERL EKTAQLETEL TRPLPLGEVV MVTPWMTIGQ  360
LREKAHSALR DTYCLMDHFV VSQTGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	6e-28	BBR-BPC family protein