PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001224.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 415aa MW: 47641.3 Da PI: 8.7624

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001224.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.4e-16	210	257	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+++Ed++l d++ +G g+W++++ + g+ R++k+c++rw +yl Cse_sc001224.1_g010.1 210 RGLWSPDEDQKLRDYIMNHGLGCWSSVPIHAGLQRSGKSCRLRWINYL 257 788*******************************************97 PP
2	Myb_DNA-binding	48.2	2.6e-15	263	308	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r+ +T +Ed++++ ++ +lG++ W+ I+++++ gRt++++k++w++yl Cse_sc001224.1_g010.1 263 RDTFTFQEDDIILTLHGMLGNK-WSQISQHFP-GRTDNEIKNHWHSYL 308 789*****************.*****.**********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MVNMASSCSL AVVNTYPLSS YTFGTKEPKM EKDTSVAARL ARMKLNYMKE GMRTSVEGVL 60 LVQEHNHPHI LLLQIGNTFC KLPGGRLKPG ENEVEGLKRK LTSKLAANST GLQPDWQIGE 120 CAGVWWRPNF ETIMYPYCPP HITKPKVKRE CKKLYVVHLS EREYFAVPKN LKLLAVPLFE 180 LYDNVQDGIS DSHFTMRFNS SEKPKLKHKR GLWSPDEDQK LRDYIMNHGL GCWSSVPIHA 240 GLQRSGKSCR LRWINYLRPG LKRDTFTFQE DDIILTLHGM LGNKWSQISQ HFPGRTDNEI 300 KNHWHSYLKK KVDKQTDSSL ESSEAYGCRK LPNILFADWL SHERFHNFGT SSHSLVSTGA 360 CHYTFGSQTQ VMNKIQEESS YSFADSVDHL QLKYGHQHVE SNFYDIISDD YTCQA

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MVNMASSCSL AVVNTYPLSS YTFGTKEPKM EKDTSVAARL ARMKLNYMKE GMRTSVEGVL  60
LVQEHNHPHI LLLQIGNTFC KLPGGRLKPG ENEVEGLKRK LTSKLAANST GLQPDWQIGE  120
CAGVWWRPNF ETIMYPYCPP HITKPKVKRE CKKLYVVHLS EREYFAVPKN LKLLAVPLFE  180
LYDNVQDGIS DSHFTMRFNS SEKPKLKHKR GLWSPDEDQK LRDYIMNHGL GCWSSVPIHA  240
GLQRSGKSCR LRWINYLRPG LKRDTFTFQE DDIILTLHGM LGNKWSQISQ HFPGRTDNEI  300
KNHWHSYLKK KVDKQTDSSL ESSEAYGCRK LPNILFADWL SHERFHNFGT SSHSLVSTGA  360
CHYTFGSQTQ VMNKIQEESS YSFADSVDHL QLKYGHQHVE SNFYDIISDD YTCQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	5e-54	MYB family protein