PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001145.1_g120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | C3H | ||||||||
Protein Properties | Length: 216aa MW: 23081.1 Da PI: 5.3681 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.3e-07 | 94 | 117 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +lC+ f++ GtC+y +C+FaH+ Cse_sc001145.1_g120.1 94 KAKLCCKFRA-GTCPYITNCNFAHS 117 778*******.*************8 PP | |||||||
2 | zf-CCCH | 17.7 | 6.4e-06 | 144 | 165 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+ C yGd+C+F H+ Cse_sc001145.1_g120.1 144 NCKKFYTEEGCLYGDNCTFLHD 165 7********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MDYGRESGNV FQIVAGGSKG GGDYWWDQPV WATEDEYGVW DREAFVDNNL NSNYDGRQSK 60 TRSGSETPDK KRYGQGGDTQ ATSRSKAIGK MFFKAKLCCK FRAGTCPYIT NCNFAHSNEE 120 LRRPPPNWQE IVAAHEEERG VTGNCKKFYT EEGCLYGDNC TFLHDEQSKA RESVVISLGP 180 GSGGGYDGGG GGSRGGYGGG GGVVSGGGGG SGANDF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 2e-50 | C3H family protein |