PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001081.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 579aa    MW: 64440.7 Da    PI: 5.4802
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001081.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS217.19.1e-671485102358
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl...fs 85 
                            ++lL  cA a+ssg+ +++q+lL  l+elasp+gd++ Rla++ ++AL +++++ +++ +k + p+ + ++++     +   +   f+
  Cse_sc001081.1_g040.1 148 EQLLNPCASAISSGNVTRVQHLLFVLQELASPTGDANYRLASHGMQALLHHISSATNTPAKVMiPAITFATSTPLFFQK---TlinFN 232
                            689***************************************************8887777775677777544444444...4456** PP

                   GRAS  86 evsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleet 161
                            ++ P++++ + +aN+aIl+ ++++     +++Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp +R+T+v +   +      +       
  Cse_sc001081.1_g040.1 233 DINPWFTIPNNIANNAILQVLSEQgqkscKTLHILDIGVSHGFQWPTLLEALSRRPgGPPPLVRLTVVPPTPDNhqipfaNCPLGYDF 320
                            *********************98877777899************************55566*******98443357888766667788 PP

                   GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh. 248
                             + +++fA+  ++++++n l    l++l+ + ++ + +E+l+V+ +++lh+l    ++++++r+++Lkl++++ P+ v+++++++d+ 
  Cse_sc001081.1_g040.1 321 TSSINRFAKVYNINIQINRLDNCPLQSLNSQVISSSLEETLIVCAQFRLHNLN---HTIPDNRTDFLKLMRNMDPQAVILSDNNMDCs 405
                            999****************87779****************************8...8899999*********************8874 PP

                   GRAS 249 ..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                              + ++F +rf+  l+y + ++ds+++ +    + r + Er+ll+ e+  ++ ++ ++    +e++ekW er++ +GF + ++s++++
  Cse_sc001081.1_g040.1 406 ctSCSNFDTRFSLNLDYLWCFLDSTSVAF----KGREMEERKLLEGEAATALINACEM----NEKKEKWGERMNGVGFVENAFSDDVV 485
                            334569*******************9997....8899999999999999988888777....89999********************* PP

                   GRAS 335 kqaklllrkvk.sdgyrveeesgsl 358
                            +qa++ll+k++  +++rv+e++g l
  Cse_sc001081.1_g040.1 486 DQARALLKKYDsHWEMRVDEKDGFL 510
                            ***********9999*****99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    
MAETLLFGEP DPDLDSGHIL DWLEDSMPSL PSLLDDLYGS TDISDDWWGL DPFEANNIST  60
SNSAENLASP VSSAFTSSPV DAFLVYDEPQ EPVPVSDVSK KRKAPADHIQ MTQTAPQAKR  120
SNGNKKGNGK STKENSNSGN NKGGRWAEQL LNPCASAISS GNVTRVQHLL FVLQELASPT  180
GDANYRLASH GMQALLHHIS SATNTPAKVM IPAITFATST PLFFQKTLIN FNDINPWFTI  240
PNNIANNAIL QVLSEQGQKS CKTLHILDIG VSHGFQWPTL LEALSRRPGG PPPLVRLTVV  300
PPTPDNHQIP FANCPLGYDF TSSINRFAKV YNINIQINRL DNCPLQSLNS QVISSSLEET  360
LIVCAQFRLH NLNHTIPDNR TDFLKLMRNM DPQAVILSDN NMDCSCTSCS NFDTRFSLNL  420
DYLWCFLDST SVAFKGREME ERKLLEGEAA TALINACEMN EKKEKWGERM NGVGFVENAF  480
SDDVVDQARA LLKKYDSHWE MRVDEKDGFL LKARSPPLEV EQAQVHGLPS FVIIKTTDFL  540
LSNGTRYLAL YRIKCRQRCD RFGSTSWKNP MSNLVPDKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-114GRAS family protein