PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001068.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 330aa    MW: 37336.8 Da    PI: 7.764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001068.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd  lv +v+q+G+g+W+ ++   g++R+ k+c++rw +yl
  Cse_sc001068.1_g030.1 14 KGPWTPEEDIMLVSYVQQHGPGNWRQVPTNTGLRRCSKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding48.22.5e-1567112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg +T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Cse_sc001068.1_g030.1  67 RGDFTDDEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                            899*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MGRPPCCDKL GVKKGPWTPE EDIMLVSYVQ QHGPGNWRQV PTNTGLRRCS KSCRLRWTNY  60
LRPGIRRGDF TDDEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLRKLE  120
MGSEEHDLNH DNKDRFACST TSSSSSHCMS RGQWEKRLQT DIHLAKQALS DALSVDRKPI  180
CATQTTKPST QTPIYPSSTD NIAKLLKGFM KKSPKITKTS SNSSTRESSG EVKYVLSSES  240
KSNSGVNLSQ AFESLFGFNQ CFESPDNSDL SHSNMSPEGS IFQGESKEEL RFTMFENWLL  300
DETVGGVVVH QGKEDLTNFA FDENPNFFDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-104MYB family protein