PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001010.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Nin-like
Protein Properties Length: 315aa    MW: 35650.8 Da    PI: 10.0515
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001010.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK46.38.3e-1578126349
                 RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWP..hRki 49 
                            +++++ed++++  +pi +A+k Lgv+ ++LKriCR++++  WP  hR +
  Cse_sc001010.1_g040.1  78 ESVTMEDIQQHIGKPIGEASKRLGVSRSTLKRICRKLNVTSWPkpHRNM 126
                            6799**************************************7336665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MEQREGKYDA SSTLLLLQEQ PTKNQSRNLA ISSSSALSYR HELPEKSHMS SNTHTTTSDS  60
IAEEKRVSAK RRRKPKMESV TMEDIQQHIG KPIGEASKRL GVSRSTLKRI CRKLNVTSWP  120
KPHRNMTYKH LSIHAVVLLL VKVKRWSCSS NRHGFEARWW TCGKHSAFVS KPNLTIEAHG  180
SSMISRSSKE SDDSIETLNP IPKPPQARSD MFTASPEKNV AKDSQDIKTM AVKATYRDDM  240
IKFQFPLSSG LLELKQEVAI RFLLDNTRLH LKYRDEDGDP ILVACDEDLS ILIMSYSVSI  300
VGNNTIKLMV KIADD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.12e-19Nin-like family protein