PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001000.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 783aa MW: 90639 Da PI: 8.7457

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001000.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.9	5.2e-11	99	173	1	79
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY Y+k++GF v k++s+ks +++e++ t C++ k+ +++k+ + ++r+ t+t+C a++ + +kw+ + Cse_sc001000.1_g040.1 99 DFYAIYGKKMGFGVYKRSSQKSLNDEETKYVTIACNRAQKSVSKSKN---SFNPRPITKTDCGARVSAVSS-GSKWKCE 173 6***********************************999999888...99***********987666.7777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence
MSRSSSLPSS SYASKESSYL SSPLHDDYLS ETPKITDIKN VEYDEEGTKN YPFHLEKETN 60 CETQIEENIE CYEGSCAHDE GVKEPKVGMT FDSIKELSDF YAIYGKKMGF GVYKRSSQKS 120 LNDEETKYVT IACNRAQKSV SKSKNSFNPR PITKTDCGAR VSAVSSGSKW KCEKTIEIYQ 180 RAGVRMNKSF NTFVVQSGGY EDLPFTERDC RNYIDKVKRL KFREGDAEAV QGYFMKVQST 240 DREFFYAWEL DEENRLKSLF WADARCRAAY EEFGDVVTFD TTLLTNKYEM PMAPFVGVNH 300 HGQSILLGCG LISNEDTKTF TWLFRSWLTC MSGRARDAII TDQDQAMKNA IEIFFPHARH 360 IWCLWHIMKK LPEKFGKHKK YKSIKYKLKK VVYDSLTSSE FEASWNGMLE TYKLDNNKWL 420 KDLYAERQRW VPCFVKDIFW AGMSTTQRSE SINSFFDKYL NKKTTLKQFV EQYENALRDR 480 AEKENIEDFN SYNFSYPPIT RYAMEEQMKH VLTNAKFKEF REELMGKMYC GVGSIKSEGG 540 HTNYEVLEDV MDNGKLIKKQ YAVWFKKGEP YEDCDIRCIC RLFEFRGMLC RHALTVLINE 600 SIYLVPNKYI LRRWRKDVKR RHTKVKVNYS DWVVSDVGRR YDKMCTAFSE VADLASALDE 660 KCSLVLDRVN ELKSEILSGK VSTSSPVCTP HTSASIRDNN KIRDPNGVQG KGRPAGRIKP 720 TFEKIIKRNE KKRKKLQDTD NIGCGADNSE TMKKCSKKKC PSQANHTCHQ MQQSSHLSSI 780 DGV

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence

MSRSSSLPSS SYASKESSYL SSPLHDDYLS ETPKITDIKN VEYDEEGTKN YPFHLEKETN  60
CETQIEENIE CYEGSCAHDE GVKEPKVGMT FDSIKELSDF YAIYGKKMGF GVYKRSSQKS  120
LNDEETKYVT IACNRAQKSV SKSKNSFNPR PITKTDCGAR VSAVSSGSKW KCEKTIEIYQ  180
RAGVRMNKSF NTFVVQSGGY EDLPFTERDC RNYIDKVKRL KFREGDAEAV QGYFMKVQST  240
DREFFYAWEL DEENRLKSLF WADARCRAAY EEFGDVVTFD TTLLTNKYEM PMAPFVGVNH  300
HGQSILLGCG LISNEDTKTF TWLFRSWLTC MSGRARDAII TDQDQAMKNA IEIFFPHARH  360
IWCLWHIMKK LPEKFGKHKK YKSIKYKLKK VVYDSLTSSE FEASWNGMLE TYKLDNNKWL  420
KDLYAERQRW VPCFVKDIFW AGMSTTQRSE SINSFFDKYL NKKTTLKQFV EQYENALRDR  480
AEKENIEDFN SYNFSYPPIT RYAMEEQMKH VLTNAKFKEF REELMGKMYC GVGSIKSEGG  540
HTNYEVLEDV MDNGKLIKKQ YAVWFKKGEP YEDCDIRCIC RLFEFRGMLC RHALTVLINE  600
SIYLVPNKYI LRRWRKDVKR RHTKVKVNYS DWVVSDVGRR YDKMCTAFSE VADLASALDE  660
KCSLVLDRVN ELKSEILSGK VSTSSPVCTP HTSASIRDNN KIRDPNGVQG KGRPAGRIKP  720
TFEKIIKRNE KKRKKLQDTD NIGCGADNSE TMKKCSKKKC PSQANHTCHQ MQQSSHLSSI  780
DGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	727	734	KRNEKKRK
2	731	735	KKRKK
3	731	758	KKRKKLQDTDNIGCGADNSETMKKCSKK
4	731	759	KKRKKLQDTDNIGCGADNSETMKKCSKKK
5	732	759	KKRKKLQDTDNIGCGADNSETMKKCSKK
6	732	760	KKRKKLQDTDNIGCGADNSETMKKCSKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-112	FAR1 family protein