PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000944.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 1046aa MW: 119008 Da PI: 9.5584

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000944.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.9	1.5e-10	416	461	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT +E+++ ++++ G +W Ia+++ ++Rt++qc sr+q Cse_sc000944.1_g060.1 416 RGKWTNDEEKKMLHCFSNRGFSNWIDIAKELKTNRTPYQCLSRFQR 461 89******************************************96 PP
2	Myb_DNA-binding	49.2	1.2e-15	471	513	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+ Ede l +av+++G +W +Ia+t+ gRt+ qc +rw k Cse_sc000944.1_g060.1 471 EWTPTEDEELRKAVAEYGETNWQLIASTLS-GRTGTQCSNRWKK 513 7***************************.*********98 PP
3	Myb_DNA-binding	41.1	4.2e-13	523	567	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW +Ed++l+ av+++G ++W++I + ++ gR qc++rw + Cse_sc000944.1_g060.1 523 GRWDSDEDKRLKIAVRLFGAKNWNKITKFVP-GRMQGQCRERWVNC 567 89***************************.*********986 PP
4	Myb_DNA-binding	39.5	1.3e-12	575	619	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++WT+eEd +l+ av+++ W+++a+++ Rt+ qc+ rw +l Cse_sc000944.1_g060.1 575 DKWTEEEDMKLKAAVEEHNYS-WARVAACIA-PRTDSQCRRRWKVLL 619 69**************988.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1046 aa Download sequence
MSDTETDSDD NEFQQDIQAL RRACSIKTDD VIPKSSSSTV TADDDDKSDY EEDMVFLRDL 60 KIRFSVPNNK KKDEKEEEEV VMKPLNTILP DDDNNIDDED YGGDFETLRA IQRRFSQYND 120 SKSNGMESSV QRSEKQVGAT NIIDLGKESS PNFFVTRINN RQGFPDSEDG RAANNHISSN 180 ITSASNVSEG REPGSELVPV GDCGFPASAQ AFVEAIKKNR TYQKFLRDKL IQVEARLEEN 240 KKLRERVKFL KGFQVACRKR TGLALSHNKD PRFQLISVPK RRANASKIKD TSTHPINQGP 300 AQNPQVAIFK DALLKYPFSL SREPWSKEDK ENLMKGIKQQ IQEMMMQDLF SAENPDSSNL 360 DRVITRIKKH EITHEEIRSF LPKVNWEQLA SMYLSGRSGP ECESRWRNCE DPLINRGKWT 420 NDEEKKMLHC FSNRGFSNWI DIAKELKTNR TPYQCLSRFQ RSLNPSILNN EWTPTEDEEL 480 RKAVAEYGET NWQLIASTLS GRTGTQCSNR WKKSLNPLRK RVGRWDSDED KRLKIAVRLF 540 GAKNWNKITK FVPGRMQGQC RERWVNCLDP SLKMDKWTEE EDMKLKAAVE EHNYSWARVA 600 ACIAPRTDSQ CRRRWKVLLP HQVPMLKAAK EIEKRCFVSN FVDREGERPQ LTYKDFNKPL 660 LLESGPKANE DNIISKDKKR RTVGKGGPGR AKKVARTGKA RKLVDEDDVE NSDGQADITS 720 NGDGENCEVE KEATGKSKSK GKGRSVGRPR RVKKVAHTGK ARKLVDEDDV EDNDGQADIT 780 SNDGDTTYDG DDCEVRKEAT GKRKSQQKER SILKVRSRRA KVSKLIDDGH GDITSNGRLT 840 RQSLKNKANT SSKDAGLLEQ DSGEGIRTSD GDNCEIKKKP TRKRKRKQRV NDEHEEMDEN 900 CEPGPISKKK STKESVVCGL ACRDIAKYEA ILTNERSKHD SFSVSRLSRV PLMIKDVPSR 960 DERCFSRVML KSMSGDGPQA KTLRKCKASS KLPNGTHSRG RKRNTDIKIS IRKRKAVDGS 1020 DGFGEIVLED EETFAHFLSK LKKEEA

Sequence ? help Back to Top

Protein Sequence Length: 1046 aa Download sequence

MSDTETDSDD NEFQQDIQAL RRACSIKTDD VIPKSSSSTV TADDDDKSDY EEDMVFLRDL  60
KIRFSVPNNK KKDEKEEEEV VMKPLNTILP DDDNNIDDED YGGDFETLRA IQRRFSQYND  120
SKSNGMESSV QRSEKQVGAT NIIDLGKESS PNFFVTRINN RQGFPDSEDG RAANNHISSN  180
ITSASNVSEG REPGSELVPV GDCGFPASAQ AFVEAIKKNR TYQKFLRDKL IQVEARLEEN  240
KKLRERVKFL KGFQVACRKR TGLALSHNKD PRFQLISVPK RRANASKIKD TSTHPINQGP  300
AQNPQVAIFK DALLKYPFSL SREPWSKEDK ENLMKGIKQQ IQEMMMQDLF SAENPDSSNL  360
DRVITRIKKH EITHEEIRSF LPKVNWEQLA SMYLSGRSGP ECESRWRNCE DPLINRGKWT  420
NDEEKKMLHC FSNRGFSNWI DIAKELKTNR TPYQCLSRFQ RSLNPSILNN EWTPTEDEEL  480
RKAVAEYGET NWQLIASTLS GRTGTQCSNR WKKSLNPLRK RVGRWDSDED KRLKIAVRLF  540
GAKNWNKITK FVPGRMQGQC RERWVNCLDP SLKMDKWTEE EDMKLKAAVE EHNYSWARVA  600
ACIAPRTDSQ CRRRWKVLLP HQVPMLKAAK EIEKRCFVSN FVDREGERPQ LTYKDFNKPL  660
LLESGPKANE DNIISKDKKR RTVGKGGPGR AKKVARTGKA RKLVDEDDVE NSDGQADITS  720
NGDGENCEVE KEATGKSKSK GKGRSVGRPR RVKKVAHTGK ARKLVDEDDV EDNDGQADIT  780
SNDGDTTYDG DDCEVRKEAT GKRKSQQKER SILKVRSRRA KVSKLIDDGH GDITSNGRLT  840
RQSLKNKANT SSKDAGLLEQ DSGEGIRTSD GDNCEIKKKP TRKRKRKQRV NDEHEEMDEN  900
CEPGPISKKK STKESVVCGL ACRDIAKYEA ILTNERSKHD SFSVSRLSRV PLMIKDVPSR  960
DERCFSRVML KSMSGDGPQA KTLRKCKASS KLPNGTHSRG RKRNTDIKIS IRKRKAVDGS  1020
DGFGEIVLED EETFAHFLSK LKKEEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	882	887	RKRKRK
2	882	910	RKRKRKQRVNDEHEEMDENCEPGPISKKK
3	883	911	RKRKRKQRVNDEHEEMDENCEPGPISKKK
4	884	912	RKRKRKQRVNDEHEEMDENCEPGPISKKK
5	1001	1015	RKRNTDIKISIRKRK
6	1012	1040	RKRKRKQRVNDEHEEMDENCEPGPISKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-167	MYB family protein