PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000845.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family RAV
Protein Properties Length: 368aa    MW: 41671.9 Da    PI: 5.537
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000845.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.51.6e-082570253
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                           +ykGV    ++g W A+I+       ++r++lg+f ++ +Aa a+++a  kl
  Cse_sc000845.1_g020.1 25 RYKGVV-PQQNGHWGAQIYTK-----NQRIWLGTFKSERDAAIAYDRASIKL 70
                           699996.666899****9994.....6**********99********98877 PP
2B357.62.3e-18142238187
                            EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLk 75 
                            f+k+ltpsdv+k++rlv+pkk+a ++        +  +++s  + ++ +       ++++    y+k+s+++v+t+GW++Fvk+++L 
  Cse_sc000845.1_g020.1 142 FEKELTPSDVGKLNRLVIPKKYAVRYfppvpdndK--SQGSANVEVNLPFLlqvfsNTFKAIT-YWKSSQSFVFTRGWNQFVKEKRLM 226
                            99****************************98542..33333333333322434335555544.7*********************** PP

                            TT-EEEEEE-SS CS
                     B3  76 egDfvvFkldgr 87 
                            + D + F+++++
  Cse_sc000845.1_g020.1 227 AQDKISFYFQDN 238
                            ********8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MEEISNSNCE NTCHSVNDSH AYSQRYKGVV PQQNGHWGAQ IYTKNQRIWL GTFKSERDAA  60
IAYDRASIKL SDAPRNLPWP TKTTIQEANF QSLNTMETIL AIIKDGSYQS KFDEFIRLKT  120
EKENDNDLSV QNSCGFSCRL VFEKELTPSD VGKLNRLVIP KKYAVRYFPP VPDNDKSQGS  180
ANVEVNLPFL LQVFSNTFKA ITYWKSSQSF VFTRGWNQFV KEKRLMAQDK ISFYFQDNPQ  240
MQNSGCWFID TCLSTSNIGA NLKLGLGTQV KYLVPKEDEE GSVEDQEMKD KVIQASNVET  300
KGFIDTCLST SNIGANLKLG LGTQVKYLVP KEDEEGSVED HEMKDEVIQA SNETKGFMLF  360
GVQITART
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.19e-71RAV family protein