PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000828.1_g130.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 405aa    MW: 46185.4 Da    PI: 6.5473
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000828.1_g130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS387.61.4e-118374042373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lLl+cA+ +s++d+++aq++ + ls +++p+gd+ +Rl++ f++AL+ rl+  +++l+  +++++t+        +++  +++v+P
  Cse_sc000828.1_g130.1  37 RQLLLSCAHSISHSDFTAAQRITTSLSANSTPYGDSSERLIHSFAKALNLRLNP-QPNLA--INSNPTN---DLILQSSYLSLNQVTP 118
                            79***************************************************9.44444..4555554...3344466778****** PP

                   GRAS  90 ilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                            +++f++ltaNqaIlea++++  + +Hi+Dfdi++G+QWp+L+qa+a+R ++ppslRiT+ g     + ++l++tg+rL+kfA++lg++
  Cse_sc000828.1_g130.1 119 FIRFTQLTANQAILEAIDHDqtNDIHILDFDIMHGVQWPPLMQAIADR-DPPPSLRITATGT----NLDTLRRTGDRLSKFAHSLGLR 201
                            *****************9987789***********************9.899**********....99******************** PP

                   GRAS 176 fefnvl......vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                            f+f +l        ++++d+ +++L+      +E laVn+vl lhrll ++ +l      +Lk +ks++Pkvv+++e+ea+hn++ F 
  Cse_sc000828.1_g130.1 202 FRFFPLllphstNNQTVDDV-ISHLSAVVhlpNEILAVNCVLYLHRLLTDREKLCL----LLKKIKSMNPKVVTLAENEANHNHPLFI 284
                            *****988866333355555.66665444466****************77777766....**************************** PP

                   GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                             rf ea++yy+a+f+slea+lp++s+er+ vE++++g+ei+++v++eg++r+erhe+l +W+++++ aGF+ vpls +a +qaklllr
  Cse_sc000828.1_g130.1 285 SRFEEAVNYYTAVFESLEATLPPNSRERMAVEQVWFGKEIEDIVTNEGDDRKERHERLLSWEMMMRIAGFRHVPLSPFALSQAKLLLR 372
                            **************************************************************************************** PP

                   GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                             ++ s+gy+++  ++s++lgW+++pL+svS+W
  Cse_sc000828.1_g130.1 373 LHYpSEGYNLQVVNDSFFLGWQNQPLFSVSSW 404
                            ******************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MLSSESCSHH QEQNQDQEVH IHPDLFPPPP SPSIYFRQLL LSCAHSISHS DFTAAQRITT  60
SLSANSTPYG DSSERLIHSF AKALNLRLNP QPNLAINSNP TNDLILQSSY LSLNQVTPFI  120
RFTQLTANQA ILEAIDHDQT NDIHILDFDI MHGVQWPPLM QAIADRDPPP SLRITATGTN  180
LDTLRRTGDR LSKFAHSLGL RFRFFPLLLP HSTNNQTVDD VISHLSAVVH LPNEILAVNC  240
VLYLHRLLTD REKLCLLLKK IKSMNPKVVT LAENEANHNH PLFISRFEEA VNYYTAVFES  300
LEATLPPNSR ERMAVEQVWF GKEIEDIVTN EGDDRKERHE RLLSWEMMMR IAGFRHVPLS  360
PFALSQAKLL LRLHYPSEGY NLQVVNDSFF LGWQNQPLFS VSSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-120GRAS family protein