PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000813.1_g080.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 713aa    MW: 81312 Da    PI: 5.3641
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000813.1_g080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS152.24.9e-471233129366
                   GRAS 129 lqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld 215
                            +qaL+s    +   l+i ++g      + +++et + La+fA+++++pf+fn+++ +++ d++ + L+++ +E++a+ + + l +l  
  Cse_sc000813.1_g080.1   1 MQALTSHCgWDIECLKISAIGT---RLESKIKETCNGLADFAKSMNIPFSFNIVMLTDILDFKKDLLELDDNEKVAIYSPYFLSSLIV 85 
                            677776663445689******9...57999************************99*******************************8 PP

                   GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                            e+  le+    +++ +++++P +  ++e ea+h+s+ F++rfleal +y alfds++  l+ +   r++ E +++g+ ++n+va+eg+
  Cse_sc000813.1_g080.1  86 EPNRLEH----LMREIRKINPCITLISEVEANHTSPVFVTRFLEALFFYGALFDSVSDCLADDYLSRKVSESVIFGQPLRNIVAAEGD 169
                            8888888....***************************************************************************** PP

                   GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                            er+ rh t + Wr+ +e++G+++v+ls+   ++akl+++k++  +  +++ +  ++v gWkd++
  Cse_sc000813.1_g080.1 170 ERTIRHITIKVWRAFFERFGMSEVELSDASLNEAKLIVNKFDcRNSCMLHADGRCFVVGWKDQQ 233
                            ******************************************9999***************986 PP
2GRAS2631.1e-803457114374
                   GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl...fsev 87 
                            +Ll+ Ae  s++ + +a++l+a  ++++s++g+p++Rl+ yf  A++++++r+  +++++   ++ +  +  +  ++++k    f++ 
  Cse_sc000813.1_g080.1 345 TLLASAEKTSQRRFDCASKLIAFCNNMSSNEGNPVERLVYYFSLAIRHKINREIGKVADSGLDQKMQMFDlNEALISIDKSissFHQR 432
                            69999***********************************************88888877766555555533333334443566**** PP

                   GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                             P+ ++ h  a ++Il+ v+ e+++H+iD+di  G++++ +lq LasR e    +++T+v       + +++ tgerLa++A+++++p
  Cse_sc000813.1_g080.1 433 LPLSQIYHHSAVHTILQHVK-EDKIHVIDLDIRTGTKYIVMLQDLASR-EHLECFKLTAVCT---RAESRIQDTGERLAEYAKSMNIP 515
                            ******************97.689************************.56689******99...4799******************* PP

                   GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                            f f++++++++ d++++ L+++++E++aV+  + l +l +++  le+    +++++++++P + vv+e ea+h+++ F++rf+eal +
  Cse_sc000813.1_g080.1 516 FTFKIVMVSNMLDFNIDLLELDEHEKVAVCAPFYLSTLISKPNYLEH----LMRVIRKINPCITVVTEIEANHTTPAFANRFTEALFF 599
                            **************************************966666665....************************************* PP

                   GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                            y alfds++  l++++++r++ E ++ g++i+n+va+ g+er+ rh  +  Wr  + ++G+ + +ls++a  +akl  ++v+ ++  +
  Cse_sc000813.1_g080.1 600 YGALFDSMSYCLANDDQHRKVSESVIYGQSIRNIVAADGDERTIRHIGVDVWRLFFVRFGMVETELSSDALFEAKLFDSNVDwGNSCT 687
                            **********************************************************************************9999** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                            v  + g+l++ Wkd p++svSaW+
  Cse_sc000813.1_g080.1 688 VRVDGGCLLIDWKDVPVFSVSAWK 711
                            ***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    
MQALTSHCGW DIECLKISAI GTRLESKIKE TCNGLADFAK SMNIPFSFNI VMLTDILDFK  60
KDLLELDDNE KVAIYSPYFL SSLIVEPNRL EHLMREIRKI NPCITLISEV EANHTSPVFV  120
TRFLEALFFY GALFDSVSDC LADDYLSRKV SESVIFGQPL RNIVAAEGDE RTIRHITIKV  180
WRAFFERFGM SEVELSDASL NEAKLIVNKF DCRNSCMLHA DGRCFVVGWK DQQFDQEILT  240
KTEELDNLYV DFASPPFRHM IKGTKQSQVA SRSTEMDDEK IQNNEAKEAN DRKLSANARI  300
RLAAQLFIES YSSKIDVVTD LNHPFPVSLS GLSDDERKDI ELLVTLLASA EKTSQRRFDC  360
ASKLIAFCNN MSSNEGNPVE RLVYYFSLAI RHKINREIGK VADSGLDQKM QMFDLNEALI  420
SIDKSISSFH QRLPLSQIYH HSAVHTILQH VKEDKIHVID LDIRTGTKYI VMLQDLASRE  480
HLECFKLTAV CTRAESRIQD TGERLAEYAK SMNIPFTFKI VMVSNMLDFN IDLLELDEHE  540
KVAVCAPFYL STLISKPNYL EHLMRVIRKI NPCITVVTEI EANHTTPAFA NRFTEALFFY  600
GALFDSMSYC LANDDQHRKV SESVIYGQSI RNIVAADGDE RTIRHIGVDV WRLFFVRFGM  660
VETELSSDAL FEAKLFDSNV DWGNSCTVRV DGGCLLIDWK DVPVFSVSAW KFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-48GRAS family protein