PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000810.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 648aa MW: 71701.2 Da PI: 5.8397

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000810.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5e-12	466	511	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Cse_sc000810.1_g040.1 466 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAILYINEL 511 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence
MTDYRMNNNH WTPDENASML DAFDMSSIWA NNNNTNTVPP TSSSASTSAL HQHEFNQDTL 60 QQRLQGLIDT AHESWTYAIF WQSSVLEYSG PPILGWGDGY YKGEPNKPKQ VMSATSIAEQ 120 QYRKKVLREL NSMISGTQAP ENDAVDEEVT DTEWFFLISM TQSFVNGVGL PGQAMVTNQP 180 VWVAGRERLM TSHCERARQG EGFGLQTIVC IPSADGVIEL GSTELIYQSS DIMKKVRCSF 240 NFNQARDPMQ VNDVNDDSTD PSSIWLTDPV ATSVSTVTTD VTVIKDTVGV IGSEMMTSVL 300 PSVKSHVPKQ LPFENPNSLS QNPRSGHNFG SRELNFSMEG GSGGKNLNSS YTKPEPGKFL 360 SFGESKRSIT NNGALFVGTD NNNNNNNTNK KKRSPTSCGS NEDGILSFVS GTAKSGAVAF 420 TGADSDHSDL DASMIKEVES IRVVEPEKKP RKRGRKPANG REEPLNHVEA ERQRREKLNQ 480 RFYALRAVVP NVSKMDKASL LGDAILYINE LKSKVDNTQC DKEELRNQLE ALKKELLTKD 540 SRQSSSSAIS LPDDMKMPTG VHSAIADLDI DVKVMGWDAM IRIQCNKKNH PAARLMAVFK 600 ELDFEVNHAS VSIVNDLMIQ QATVKMGSRL YSQDQLRVAL TNGFTDRL

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence

MTDYRMNNNH WTPDENASML DAFDMSSIWA NNNNTNTVPP TSSSASTSAL HQHEFNQDTL  60
QQRLQGLIDT AHESWTYAIF WQSSVLEYSG PPILGWGDGY YKGEPNKPKQ VMSATSIAEQ  120
QYRKKVLREL NSMISGTQAP ENDAVDEEVT DTEWFFLISM TQSFVNGVGL PGQAMVTNQP  180
VWVAGRERLM TSHCERARQG EGFGLQTIVC IPSADGVIEL GSTELIYQSS DIMKKVRCSF  240
NFNQARDPMQ VNDVNDDSTD PSSIWLTDPV ATSVSTVTTD VTVIKDTVGV IGSEMMTSVL  300
PSVKSHVPKQ LPFENPNSLS QNPRSGHNFG SRELNFSMEG GSGGKNLNSS YTKPEPGKFL  360
SFGESKRSIT NNGALFVGTD NNNNNNNTNK KKRSPTSCGS NEDGILSFVS GTAKSGAVAF  420
TGADSDHSDL DASMIKEVES IRVVEPEKKP RKRGRKPANG REEPLNHVEA ERQRREKLNQ  480
RFYALRAVVP NVSKMDKASL LGDAILYINE LKSKVDNTQC DKEELRNQLE ALKKELLTKD  540
SRQSSSSAIS LPDDMKMPTG VHSAIADLDI DVKVMGWDAM IRIQCNKKNH PAARLMAVFK  600
ELDFEVNHAS VSIVNDLMIQ QATVKMGSRL YSQDQLRVAL TNGFTDRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	448	456	KKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein