PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000792.1_g080.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 531aa    MW: 59761.2 Da    PI: 6.4494
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000792.1_g080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS227.85.2e-701445262374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..f 84 
                            ++lL  cA a+++g+ +++++l+  l+elasp+gd++ Rla++ ++AL +++++++++  +a +++++++ n   +  +++ ++l  f
  Cse_sc000792.1_g080.1 144 EQLLNPCAAAITAGNVARVRHLIVVLRELASPTGDANYRLASHGLQALTHHITSHTNQPTRAAQVQTAQPINfstVNPRFFQRSLinF 231
                            689***************************************************999988888888888777754444444444489* PP

                   GRAS  85 sevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeelee 160
                            +++ P++++ + +aN+ Il+ +++      + +Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp ++iT v +  ++       +    +
  Cse_sc000792.1_g080.1 232 NDINPWFTIPNNIANNSILQVLSELdhgarTNLHILDIGVSHGIQWPTLLEALSRRPgGPPPLVQITIVPPLLENnqipfaASPFGYN 319
                            ********************9987656666789************************55566******99865556688885555566 PP

                   GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                              +++ +fA+e+++++++n l    l++l+ + ++ +p+E+l+V+ +++lh+l    ++ +++r+++Lk++++l+P+ v+++++++d+
  Cse_sc000792.1_g080.1 320 FVSNILRFANEIKINLHINKLDNCPLQNLNSQFIKSSPDETLIVCAQFRLHNLS---HNKPDNRTDFLKTIRNLEPQGVILSDNNMDC 404
                            6678889*************8777*****************************8...55666678*******************9776 PP

                   GRAS 249 ...nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                               n ++F ++f++ ++y + ++ds+++ +    + r + Er++++ e+++++ +  ++    +e++e W er++ +GF    ++e++
  Cse_sc000792.1_g080.1 405 scnNCSNFETGFARRVDYLWNFLDSTSVAF----KGREMEERKMMEGEASKALINMCEM----NERKEIWGERMTGVGFVGDVFREEV 484
                            556778********************9997....7777777777777888887776666....67778******************** PP

                   GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            ++ a++llrk++ +++ r++e+++++ l Wk++p+ ++S W+
  Cse_sc000792.1_g080.1 485 MDGARALLRKYDnNWELRLDENDKCIGLWWKGQPVSFCSLWK 526
                            ************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    
MSFGEPDPNS TTDQISDWLE DTISYLPSFL DDPYGSSNII DDRFWAPAEE LEHELFSATT  60
SSILTNNSVN NSNCTVTSTN TNHVIVSDQS KQPSSDLSKK RKAPEDIVLR PTVQVKKSVN  120
RKGQGKSTKD GSNNVNNKNG RWAEQLLNPC AAAITAGNVA RVRHLIVVLR ELASPTGDAN  180
YRLASHGLQA LTHHITSHTN QPTRAAQVQT AQPINFSTVN PRFFQRSLIN FNDINPWFTI  240
PNNIANNSIL QVLSELDHGA RTNLHILDIG VSHGIQWPTL LEALSRRPGG PPPLVQITIV  300
PPLLENNQIP FAASPFGYNF VSNILRFANE IKINLHINKL DNCPLQNLNS QFIKSSPDET  360
LIVCAQFRLH NLSHNKPDNR TDFLKTIRNL EPQGVILSDN NMDCSCNNCS NFETGFARRV  420
DYLWNFLDST SVAFKGREME ERKMMEGEAS KALINMCEMN ERKEIWGERM TGVGFVGDVF  480
REEVMDGARA LLRKYDNNWE LRLDENDKCI GLWWKGQPVS FCSLWKIDEK T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199126KKRKAPEDIVLRPTVQVKKSVNRKGQGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-135GRAS family protein