PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000787.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 365aa MW: 39980.6 Da PI: 7.3064

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000787.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.8	2.7e-11	34	59	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yGd+C+F+H+ Cse_sc000787.1_g010.1 34 PGEPDCLYYLRTGMCGYGDTCRFNHP 59 5789*********************9 PP
2	zf-CCCH	24.6	4.3e-08	87	102	11	26
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 rtGtCkyG++Ck++H+ Cse_sc000787.1_g010.1 87 RTGTCKYGSSCKYNHP 102 8**************8 PP
3	zf-CCCH	31.9	2.3e-10	124	148	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG Ck+G +CkF+H++ Cse_sc000787.1_g010.1 124 QKSCPHYIRTGSCKFGVTCKFHHPQ 148 567********************97 PP
4	zf-CCCH	34	4.8e-11	229	253	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr+f+ +G CkyG++Ck++H++ Cse_sc000787.1_g010.1 229 EPECRYFMSSGMCKYGSNCKYHHPK 253 799********************96 PP
5	zf-CCCH	32.5	1.4e-10	274	298	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++ +GtCk+G+ Ck+ H+ Cse_sc000787.1_g010.1 274 GQTVCSYYSLYGTCKFGSACKYDHP 298 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MPDHRHEHGN IEEAIRRLKI EKDDPGLTGY PDRPGEPDCL YYLRTGMCGY GDTCRFNHPT 60 YNGQDDKHGG DLPERVGEPD CVYEGTRTGT CKYGSSCKYN HPHGGRDACP VVLNTIGLPM 120 RQGQKSCPHY IRTGSCKFGV TCKFHHPQLP LDGANTPVSG PMSYAPSHIS GVPSWPYMSQ 180 QTYFPMVLPP SGTPYIGNMS PILSTNGLTP IDCVYPSTPS SPLPERPNEP ECRYFMSSGM 240 CKYGSNCKYH HPKEKTVQSA VSSLSPFGLP LRPGQTVCSY YSLYGTCKFG SACKYDHPLV 300 VYSYNYNMGL TSLPRVDPLF MSYGGTNSPT TRSADSTSNG KLSTDDSCAE HVGSSSHSSS 360 QNQSD

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MPDHRHEHGN IEEAIRRLKI EKDDPGLTGY PDRPGEPDCL YYLRTGMCGY GDTCRFNHPT  60
YNGQDDKHGG DLPERVGEPD CVYEGTRTGT CKYGSSCKYN HPHGGRDACP VVLNTIGLPM  120
RQGQKSCPHY IRTGSCKFGV TCKFHHPQLP LDGANTPVSG PMSYAPSHIS GVPSWPYMSQ  180
QTYFPMVLPP SGTPYIGNMS PILSTNGLTP IDCVYPSTPS SPLPERPNEP ECRYFMSSGM  240
CKYGSNCKYH HPKEKTVQSA VSSLSPFGLP LRPGQTVCSY YSLYGTCKFG SACKYDHPLV  300
VYSYNYNMGL TSLPRVDPLF MSYGGTNSPT TRSADSTSNG KLSTDDSCAE HVGSSSHSSS  360
QNQSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-82	C3H family protein