PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000722.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 495aa MW: 54342.3 Da PI: 7.8263

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000722.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.2	4.3e-18	114	200	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L+ea+ ++ +l+rg+l++ +Weev++ + r+++ ++s +qCk+k +nl+kryk +++++ + s+ +s++p+f+ +e Cse_sc000722.1_g020.1 114 EWSDNAIECLLEAYLNKFIELNRGNLRGRDWEEVAAIVseRSEKTRKSVEQCKNKVDNLKKRYKLERHRMVMG-SGGTSHWPWFKTME 200 5***********************************777788999********************99.67777******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MASSDDDFPL ITDTTTTSTV NHRSNPNFHH HAPPPQSTDH DYTNGGAYIS PPIPIAMPYN 60 HEPDLHRVKS VRTEKWNSDE LSDGGSYKKP KVMTMTMTSS SGGGNGEYRK DREEWSDNAI 120 ECLLEAYLNK FIELNRGNLR GRDWEEVAAI VSERSEKTRK SVEQCKNKVD NLKKRYKLER 180 HRMVMGSGGT SHWPWFKTME QIVGNSLPMM KVCLGEESSG CGMSSPVRQS KRYATATSSP 240 SRQITIAKQK PVTNARWRRV VFKISGASLA GTGAHSVDPK VAMSIAREVS MACNVGVEVA 300 IVVGGRNFFC GDTWVTATGM DRSTAYQIGM MATVMNSILI QSALEKLGVQ TRVQSPFTMP 360 EVFEPYSRQR AIRHLEKGRV VIFGGIGGGT GNPLFSTDTA AALRASEIHA DAFIKGTNAD 420 GVYECDSMDS VAFEHISFRE LSSRGSSPID MMAATYCEEN GIPVVIFNLH EPGNISKALS 480 GEYVGTLIDQ TGRTG

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MASSDDDFPL ITDTTTTSTV NHRSNPNFHH HAPPPQSTDH DYTNGGAYIS PPIPIAMPYN  60
HEPDLHRVKS VRTEKWNSDE LSDGGSYKKP KVMTMTMTSS SGGGNGEYRK DREEWSDNAI  120
ECLLEAYLNK FIELNRGNLR GRDWEEVAAI VSERSEKTRK SVEQCKNKVD NLKKRYKLER  180
HRMVMGSGGT SHWPWFKTME QIVGNSLPMM KVCLGEESSG CGMSSPVRQS KRYATATSSP  240
SRQITIAKQK PVTNARWRRV VFKISGASLA GTGAHSVDPK VAMSIAREVS MACNVGVEVA  300
IVVGGRNFFC GDTWVTATGM DRSTAYQIGM MATVMNSILI QSALEKLGVQ TRVQSPFTMP  360
EVFEPYSRQR AIRHLEKGRV VIFGGIGGGT GNPLFSTDTA AALRASEIHA DAFIKGTNAD  420
GVYECDSMDS VAFEHISFRE LSSRGSSPID MMAATYCEEN GIPVVIFNLH EPGNISKALS  480
GEYVGTLIDQ TGRTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein