PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000641.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 547aa    MW: 60181.1 Da    PI: 5.8329
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000641.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.12.1e-1251655311374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                            lv++L++cAeav+ g+++la  l+  l+ l  + +++  + ++ ++f+ AL++r+++      + +   e s     e+   ++ ++e
  Cse_sc000641.1_g030.1 165 LVHVLMTCAEAVQRGNMSLAGLLIDDLQGLlgRVNSACGIGKVGSFFVDALSRRVVH---APQNGVVQVELS---AYENEILYHHYYE 246
                            689**************************9888888899*****************9...222223333333...5666677889*** PP

                   GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                            ++P+lkf+h+taNqaIlea++g+++vH+iDf+++qGlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g +La++A++++v
  Cse_sc000641.1_g030.1 247 ACPYLKFAHFTANQAILEAFDGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLKLAELARSVNV 334
                            **************************************************************************************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            +f f+ ++a+rl+d+++++L+v+p+Ea+aVn+++qlh+ll  +++   ++d vL+ + +l+P+++ vveqe+ hn+++Fl+rf+eal+
  Cse_sc000641.1_g030.1 335 RFAFRGVAATRLDDVKPWMLQVSPKEAVAVNSIMQLHKLLGPNGPRGPPIDLVLDWIHDLNPRILMVVEQESYHNQPQFLDRFTEALY 422
                            *******999****************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            yys++fdsl+a    +++ ++++ + +++rei+nvv+ceg++r+erhe l +Wr+rl++aGF+p++l+++a kqa++ll  ++ +gy+
  Cse_sc000641.1_g030.1 423 YYSTMFDSLDAC---TAQPEKTLAELYIQREICNVVCCEGSARVERHEPLVRWRDRLTSAGFRPLHLGSNAFKQARMLLTLFSAEGYS 507
                            *********999...688888899999************************************************************* PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                            vee++g+l+lgW++rpL+++SaW+
  Cse_sc000641.1_g030.1 508 VEENEGCLTLGWHSRPLIAASAWQ 531
                            ***********************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MSPHTHTSSL TNASATSPSP SSSACSTSTK PQPQPPEHHQ LDHLLAGAGY KVRSNELTHV  60
AERLQSLESA MVKSSPGEMS ELGNDGVYYN PTDLASWVDS LLNELNTEPG KPDQMCSGFS  120
GSRPDDLNLS TNLNSQVSND VMVNSGNMNV LPHGEIFEEE VSIRLVHVLM TCAEAVQRGN  180
MSLAGLLIDD LQGLLGRVNS ACGIGKVGSF FVDALSRRVV HAPQNGVVQV ELSAYENEIL  240
YHHYYEACPY LKFAHFTANQ AILEAFDGHD CVHVIDFNLM QGLQWPALIQ ALALRPGGPP  300
LLRLTGIGPP SPDGRDSLRE IGLKLAELAR SVNVRFAFRG VAATRLDDVK PWMLQVSPKE  360
AVAVNSIMQL HKLLGPNGPR GPPIDLVLDW IHDLNPRILM VVEQESYHNQ PQFLDRFTEA  420
LYYYSTMFDS LDACTAQPEK TLAELYIQRE ICNVVCCEGS ARVERHEPLV RWRDRLTSAG  480
FRPLHLGSNA FKQARMLLTL FSAEGYSVEE NEGCLTLGWH SRPLIAASAW QAIPKPSHTI  540
GDINHSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-138GRAS family protein