PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000585.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

BBR-BPC

Protein Properties

Length: 478aa MW: 53372.3 Da PI: 5.966

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000585.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	57.6	6e-18	186	270	1	84
GAGA_bind 1 mdddgsrernkgyye......pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 mdd+g++ r+ g + ++ +s+k q+m+++aerda i+ernla+sekk a+aerd+a+lqrd+a+aern a++erdn++ Cse_sc000585.1_g070.1 186 MDDNGHH-REDGRQKqlrwlmQHqPSMK-----QIMTIMAERDATIQERNLAMSEKKTALAERDIALLQRDSAIAERNSAIMERDNAI 267 8888875.55553331112223335555.....******************************************************9 PP GAGA_bind 82 lal 84 ++ Cse_sc000585.1_g070.1 268 ATF 270 976 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MIRDGCCPRV NDVAVIYVLI VQMRSQPLDV GLLSTPRASR GFAHEQERAG GELTAFCFFD 60 EDGSTSKDEL QEAGNNFLTD RALRGFGHGS LDTRVAIGFA LDKAHGMKCL NAYRIIHRDL 120 TPVIHYNNTS AESVFMLKEK GAVAAKQQAK GSSTFVPAKV AARFSNRTCS ASAQSDEHVK 180 TFVFQMDDNG HHREDGRQKQ LRWLMQHQPS MKQIMTIMAE RDATIQERNL AMSEKKTALA 240 ERDIALLQRD SAIAERNSAI MERDNAIATF VIGGFLSKTI TATKKTSRSR KVKLECDDLN 300 KVLYDDSHDW DTGDGGSNKQ EWKDQDLGLN QVTYDDTIMP MLLVEFEICK VADDSKNIQS 360 VSSLLNLEAR WPKERLEKTA QDDVLLSYAV LAGEQVCFRG FGLDLDTVLK YEGGDGYAME 420 SKVEMVACDE CNVWRHTKCN GINDDELAPG YFVCSDCDSK SKSELLSQKV WFGGKKAH

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MIRDGCCPRV NDVAVIYVLI VQMRSQPLDV GLLSTPRASR GFAHEQERAG GELTAFCFFD  60
EDGSTSKDEL QEAGNNFLTD RALRGFGHGS LDTRVAIGFA LDKAHGMKCL NAYRIIHRDL  120
TPVIHYNNTS AESVFMLKEK GAVAAKQQAK GSSTFVPAKV AARFSNRTCS ASAQSDEHVK  180
TFVFQMDDNG HHREDGRQKQ LRWLMQHQPS MKQIMTIMAE RDATIQERNL AMSEKKTALA  240
ERDIALLQRD SAIAERNSAI MERDNAIATF VIGGFLSKTI TATKKTSRSR KVKLECDDLN  300
KVLYDDSHDW DTGDGGSNKQ EWKDQDLGLN QVTYDDTIMP MLLVEFEICK VADDSKNIQS  360
VSSLLNLEAR WPKERLEKTA QDDVLLSYAV LAGEQVCFRG FGLDLDTVLK YEGGDGYAME  420
SKVEMVACDE CNVWRHTKCN GINDDELAPG YFVCSDCDSK SKSELLSQKV WFGGKKAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	2e-34	BBR-BPC family protein