PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000546.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

TCP

Protein Properties

Length: 371aa MW: 39803.8 Da PI: 7.0172

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000546.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.2	4.9e-41	59	193	2	95
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + Cse_sc000546.1_g050.1 59 APKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVP 146 789******************************************************************9998777777777755555 PP TCP 89 ........................................kaaksaa 95 + + ++ Cse_sc000546.1_g050.1 147 sqirsgyfnpnftlpqnrnlfpgiglsssdntasnllnfgSGTNLHQ 193 66667788888888887777777776554444444443332222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MDGGDDHFHH RPNFPFQLLE KKDDEASSSS RPTETNNSLQ ITTTTADTSA STEPSKKLAP 60 KRTSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT 120 GTGTIPANFT SLNISLRSSG SSMSVPSQIR SGYFNPNFTL PQNRNLFPGI GLSSSDNTAS 180 NLLNFGSGTN LHQILQTKQE NRDNSIELEQ EESVSRKRRQ ESELPGQQMG NYMMQSSSAG 240 SGSLSANHGS IPANFWMVAN SNQHQGMTGD PIWTFPAAVN NAAVYRGTVS TGLHFMNFPT 300 PVALLPSQQL TTGLGAGSSG GGGFTEGQFS MLAGLSPYRP IFGPGGSEQQ ASGSQSHHAG 360 DDPHDTTSHQ S

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MDGGDDHFHH RPNFPFQLLE KKDDEASSSS RPTETNNSLQ ITTTTADTSA STEPSKKLAP  60
KRTSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT  120
GTGTIPANFT SLNISLRSSG SSMSVPSQIR SGYFNPNFTL PQNRNLFPGI GLSSSDNTAS  180
NLLNFGSGTN LHQILQTKQE NRDNSIELEQ EESVSRKRRQ ESELPGQQMG NYMMQSSSAG  240
SGSLSANHGS IPANFWMVAN SNQHQGMTGD PIWTFPAAVN NAAVYRGTVS TGLHFMNFPT  300
PVALLPSQQL TTGLGAGSSG GGGFTEGQFS MLAGLSPYRP IFGPGGSEQQ ASGSQSHHAG  360
DDPHDTTSHQ S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	220	SRKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	4e-55	TCP family protein