PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000528.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 425aa MW: 46586.1 Da PI: 9.1927

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000528.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.7	8.9e-40	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv gC+ dls+ak+yhr+hkvC+vhsk+ +v+v+gle+rfCqqCsrfh l efD +krsCr+rLa+hn+rrrk+++ Cse_sc000528.1_g060.1 147 ICQVMGCDRDLSSAKDYHRKHKVCDVHSKSLKVIVAGLERRFCQQCSRFHGLPEFDGKKRSCRKRLADHNARRRKPHQ 224 5**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MLQTTLIDME WNTKWDWENL AMFGSKGVAS PKKLQSTDWG IKEGQDIDGS SNHSGVVGGS 60 GGSGSLSAST ESSFKDTAKV TKFSVDFGGG ELNKSSPSLE ASVCSSDQSI GLKLGKRTYF 120 ENNLPRSNSS VSTVKKVKLS QQSAPIICQV MGCDRDLSSA KDYHRKHKVC DVHSKSLKVI 180 VAGLERRFCQ QCSRFHGLPE FDGKKRSCRK RLADHNARRR KPHQETIQFN SRSLSSSYYD 240 GPRQLSFAFN TGPVVQTKPA VSSMWENTCN SKHSVATVKA EKYGGHDVLT HSQGVQFPNP 300 VSMTPTLSFN RNISSKGTTA GVFDQGSNLE LRRALSLLSN NSWGSSESDF GGLDHPMHTN 360 GPNIAQQGMH SAPHGLPLLS PEYWQVDQQS VDPHIHGTHF QGSHILKAPY GIQYTNPMDE 420 IVQPL

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MLQTTLIDME WNTKWDWENL AMFGSKGVAS PKKLQSTDWG IKEGQDIDGS SNHSGVVGGS  60
GGSGSLSAST ESSFKDTAKV TKFSVDFGGG ELNKSSPSLE ASVCSSDQSI GLKLGKRTYF  120
ENNLPRSNSS VSTVKKVKLS QQSAPIICQV MGCDRDLSSA KDYHRKHKVC DVHSKSLKVI  180
VAGLERRFCQ QCSRFHGLPE FDGKKRSCRK RLADHNARRR KPHQETIQFN SRSLSSSYYD  240
GPRQLSFAFN TGPVVQTKPA VSSMWENTCN SKHSVATVKA EKYGGHDVLT HSQGVQFPNP  300
VSMTPTLSFN RNISSKGTTA GVFDQGSNLE LRRALSLLSN NSWGSSESDF GGLDHPMHTN  360
GPNIAQQGMH SAPHGLPLLS PEYWQVDQQS VDPHIHGTHF QGSHILKAPY GIQYTNPMDE  420
IVQPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	221	KKRSCRKRLADHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-46	SBP family protein