PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000372.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 451aa MW: 50346.6 Da PI: 8.0787

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000372.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.8e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc000372.1_g090.1 89 FVCEICSKGFQRDQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	12.9	0.00033	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Cse_sc000372.1_g090.1 166 WKCDKCSKRYAVQSDWKAHSKTC 188 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MMMEQQKVVL EDNTIPKLGG FHAKPVGSFC SEEKDQENGS SFHQHYYEHP PPSQSQPSLK 60 RKRNLPGNPD PDAEVIALSP KTLMATNRFV CEICSKGFQR DQNLQLHRRG HNLPWKLKQR 120 NKNEVVRKKV YVCPELNCVH HEPSRALGDL TGIKKHFSRK HGEKKWKCDK CSKRYAVQSD 180 WKAHSKTCGT REYKCDCGTL FSRRDSFITH RAFCDALAEE SARALTGLAD PSGQTQIPTH 240 FSQLLDPMTH GSFLKKEDDA IINPFPSWLL QTQNQHQSQD QQCSPSTTSG PPTLLAYHPS 300 SSAYMSATAL LQKAAQIGAT HLSRNGASIH APCTTTTYQQ QYMSSNNINN NICGTSVLTS 360 TPCASGPTTT YYQQQPPPPM SMSMMMMMSS QEDGFGVGDD MSSFEDEFSQ ILESNKDNVD 420 DHANVNAKIK NEGMTRDFLG LKPVSNGMHG N

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MMMEQQKVVL EDNTIPKLGG FHAKPVGSFC SEEKDQENGS SFHQHYYEHP PPSQSQPSLK  60
RKRNLPGNPD PDAEVIALSP KTLMATNRFV CEICSKGFQR DQNLQLHRRG HNLPWKLKQR  120
NKNEVVRKKV YVCPELNCVH HEPSRALGDL TGIKKHFSRK HGEKKWKCDK CSKRYAVQSD  180
WKAHSKTCGT REYKCDCGTL FSRRDSFITH RAFCDALAEE SARALTGLAD PSGQTQIPTH  240
FSQLLDPMTH GSFLKKEDDA IINPFPSWLL QTQNQHQSQD QQCSPSTTSG PPTLLAYHPS  300
SSAYMSATAL LQKAAQIGAT HLSRNGASIH APCTTTTYQQ QYMSSNNINN NICGTSVLTS  360
TPCASGPTTT YYQQQPPPPM SMSMMMMMSS QEDGFGVGDD MSSFEDEFSQ ILESNKDNVD  420
DHANVNAKIK NEGMTRDFLG LKPVSNGMHG N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	129	KLKQRNKNEVVRKK
2	118	131	KLKQRNKNEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-121	C2H2 family protein