PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000294.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 558aa MW: 62707.9 Da PI: 9.4512

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000294.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.9e-18	132	178	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+++vkq+G + W+ Ia+ m gR +kqc++rw+++l Cse_sc000294.1_g030.1 132 KGQWTDEEDKKLLRLVKQHGERKWAHIAEQMI-GRAGKQCRERWHNHL 178 799***************************.***********97 PP
2	Myb_DNA-binding	40.8	5e-13	226	260	9	45
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+ Cse_sc000294.1_g030.1 226 ERILVEAHRKVGNK-WAEIAKLIP-GRTENSIKNHWN 260 789*********.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MEGGNHGSGY PNYGSSQKHP LVVPPPMTAI GRFLQGHTSQ SHSSHHNFEK SQEQFSPSNG 60 VYGFPSSSNE GIGGMYNQYA VSSVPCLPME KMFAADHGVY SRSYRNMHAN NEVAKSSTKM 120 KLKGGSRKNL IKGQWTDEED KKLLRLVKQH GERKWAHIAE QMIGRAGKQC RERWHNHLRP 180 DRKILGVKMR RLKIQKKRNS IAELFQLFLR SETLRASVIF QATESERILV EAHRKVGNKW 240 AEIAKLIPGR TENSIKNHWN ATKRRQNSRR KSKQNEGKNR KLRSSVLQEY IISTATSNAR 300 DDYNIASKTS TTTSTIPAVN ATPGSSPTRS SENTSMNFSI VFPELPNSNS YHSPSLDITQ 360 SYDDELTFMQ AFFVDSNYPV RQDSNNSSNE SSIHVNDPKC PLDNNLLGFS GNLQYLFASS 420 SSISNESVHI KDSKSSFDMN PLMFSDPKFS PDMHPLGFSG KSQYGIASIP HDDEDSHSYL 480 KQENLWKPQL GPDVYMSYLL EGATTLSNSC DYGYYEDTKR DMMFDGEQSV SPGSGSGPAS 540 NGKKEMDLVE IVFSYQFP

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MEGGNHGSGY PNYGSSQKHP LVVPPPMTAI GRFLQGHTSQ SHSSHHNFEK SQEQFSPSNG  60
VYGFPSSSNE GIGGMYNQYA VSSVPCLPME KMFAADHGVY SRSYRNMHAN NEVAKSSTKM  120
KLKGGSRKNL IKGQWTDEED KKLLRLVKQH GERKWAHIAE QMIGRAGKQC RERWHNHLRP  180
DRKILGVKMR RLKIQKKRNS IAELFQLFLR SETLRASVIF QATESERILV EAHRKVGNKW  240
AEIAKLIPGR TENSIKNHWN ATKRRQNSRR KSKQNEGKNR KLRSSVLQEY IISTATSNAR  300
DDYNIASKTS TTTSTIPAVN ATPGSSPTRS SENTSMNFSI VFPELPNSNS YHSPSLDITQ  360
SYDDELTFMQ AFFVDSNYPV RQDSNNSSNE SSIHVNDPKC PLDNNLLGFS GNLQYLFASS  420
SSISNESVHI KDSKSSFDMN PLMFSDPKFS PDMHPLGFSG KSQYGIASIP HDDEDSHSYL  480
KQENLWKPQL GPDVYMSYLL EGATTLSNSC DYGYYEDTKR DMMFDGEQSV SPGSGSGPAS  540
NGKKEMDLVE IVFSYQFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	6e-47	MYB family protein