PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000287.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 559aa MW: 63477.4 Da PI: 8.5653

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000287.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.8	7.2e-08	90	133	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++k+rr+++++ t+C+ak+ +k ++ +++ ++ ++HnH+l Cse_sc000287.1_g040.1 90 KKKRRRRSTTQVTNCQAKMCLKHIIgTNSYQLLTFTENHNHKLI 133 456788888999*********999**************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MVNLYICLFF LDANEIDVYD IDPECIPSPH GTKYYVPNVP AIEKPKQGHI FATFDEALKA 60 HGKPRKPVET NTLIEVPNPV VEEGGDGDGK KKRRRRSTTQ VTNCQAKMCL KHIIGTNSYQ 120 LLTFTENHNH KLIDQSNMDL SKARRQLEFG DHMFIHRASL SNIGPQKAHR LRVAMLGGFD 180 LVRGMPVDWN NFRHGMNLFI GERDAQMLVD KMLKRQEHVP GFSFIHHTVK DELCHHHQKC 240 VAFGAALLSN EKYESYCWML ESFLKVHKKQ SPLALTDQDA ALRKAVVKML PDSHHRLCMW 300 HITQKLPGKV SVNKLDGTVE CSCGHFNRHG ILCRHIFCVF NINGVTTIPS RYIANRWRQN 360 VLPAHLREKR HRYGPCIEET EIIASKILST VEESINLIRT DTDLLSDLLS KVQGLKLDIE 420 ANVPAPAGHQ NKDAMYANLL GVTVPPKVNI KNPKKCSVKG SGRIKASREK GIAQKKARTN 480 RKRAFKQRIC STCGVLGHNR RSKKCKKYQA AEVSFAEKQD DPDGDSDDFD EDNQSRESED 540 SYQSHESEDF GDTDEEADE

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MVNLYICLFF LDANEIDVYD IDPECIPSPH GTKYYVPNVP AIEKPKQGHI FATFDEALKA  60
HGKPRKPVET NTLIEVPNPV VEEGGDGDGK KKRRRRSTTQ VTNCQAKMCL KHIIGTNSYQ  120
LLTFTENHNH KLIDQSNMDL SKARRQLEFG DHMFIHRASL SNIGPQKAHR LRVAMLGGFD  180
LVRGMPVDWN NFRHGMNLFI GERDAQMLVD KMLKRQEHVP GFSFIHHTVK DELCHHHQKC  240
VAFGAALLSN EKYESYCWML ESFLKVHKKQ SPLALTDQDA ALRKAVVKML PDSHHRLCMW  300
HITQKLPGKV SVNKLDGTVE CSCGHFNRHG ILCRHIFCVF NINGVTTIPS RYIANRWRQN  360
VLPAHLREKR HRYGPCIEET EIIASKILST VEESINLIRT DTDLLSDLLS KVQGLKLDIE  420
ANVPAPAGHQ NKDAMYANLL GVTVPPKVNI KNPKKCSVKG SGRIKASREK GIAQKKARTN  480
RKRAFKQRIC STCGVLGHNR RSKKCKKYQA AEVSFAEKQD DPDGDSDDFD EDNQSRESED  540
SYQSHESEDF GDTDEEADE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	95	KKKRRR
2	90	96	KKKRRRR
3	91	96	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-15	FAR1 family protein