PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000266.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 392aa MW: 40937.6 Da PI: 6.253

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000266.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.8e-12	193	238	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Cse_sc000266.1_g030.1 193 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 238 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MSLQNAINSF DPASSHDDFL DQMLSGLQSG ASWPEISAGG GGGNGWDVDQ FDDQSNFLAT 60 KLRQHQISSG PSSAAKSLIL QQQMMLSRGL PGAGDIGNFQ NDMVDASSFK SPRGDNSIQT 120 LFNGFAGSLQ SHSSQEFPFP PTHSFGSPGT TSALVNQGQT NGGPPATAVG GSGPPAQPRQ 180 RVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNANK TDKASMLDEI IDYVKFLQLQ 240 VKVLSMSRLG GAGAVAPLVA DISPEGARDR VQVASGGAAG RITNGITSSS NNETMSVAEN 300 QVVKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCNP SSARSNHPLL GVADGNSPSS 360 PNLSALTVQS ANGGLQTEGV SIKDTTSISN KP

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MSLQNAINSF DPASSHDDFL DQMLSGLQSG ASWPEISAGG GGGNGWDVDQ FDDQSNFLAT  60
KLRQHQISSG PSSAAKSLIL QQQMMLSRGL PGAGDIGNFQ NDMVDASSFK SPRGDNSIQT  120
LFNGFAGSLQ SHSSQEFPFP PTHSFGSPGT TSALVNQGQT NGGPPATAVG GSGPPAQPRQ  180
RVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNANK TDKASMLDEI IDYVKFLQLQ  240
VKVLSMSRLG GAGAVAPLVA DISPEGARDR VQVASGGAAG RITNGITSSS NNETMSVAEN  300
QVVKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCNP SSARSNHPLL GVADGNSPSS  360
PNLSALTVQS ANGGLQTEGV SIKDTTSISN KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	203	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-56	bHLH family protein