PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000223.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 383aa MW: 44616.3 Da PI: 6.3474

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000223.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	130	177	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed ll+++++ +G g+W++ a+ g++Rt+k+c++rw++yl Cse_sc000223.1_g030.1 130 RGPWTLDEDNLLIQYITCHGEGRWNSLAKSSGLKRTGKSCRLRWLNYL 177 89********************************************97 PP
2	Myb_DNA-binding	47.2	5.2e-15	184	226	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ +++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Cse_sc000223.1_g030.1 184 GNLSPQEQLLILELHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 226 6779***************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MNLDRLPHPL NLSSRGIEIM VISCNGNVES NFHIFFECDI AIDVWRFVRV WCDNSFPFFT 60 SNEYCNDWLS YLIVIMNHDV YVVQNMAIKC QIGPLTKSKS DFCFVVEGNQ DHQNKISSSC 120 HEQEVGELRR GPWTLDEDNL LIQYITCHGE GRWNSLAKSS GLKRTGKSCR LRWLNYLKPD 180 VKHGNLSPQE QLLILELHSK WGNRWSKIAQ QLPGRTDNEI KNYWRTKVQK QARYLKIDSN 240 SKKFVEALKQ FWLPRLLEKV EQSSPSSSST STTTMDAYQK NLSHQALSNE TLMENTYSSS 300 SICSLNSTKI VLPYLPESTI QSNGYFVDNN NFDAMSFNHL NMQESRYSDM SALDFQLAEV 360 DWMNNELVDD TFWNMDELWQ FRK

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MNLDRLPHPL NLSSRGIEIM VISCNGNVES NFHIFFECDI AIDVWRFVRV WCDNSFPFFT  60
SNEYCNDWLS YLIVIMNHDV YVVQNMAIKC QIGPLTKSKS DFCFVVEGNQ DHQNKISSSC  120
HEQEVGELRR GPWTLDEDNL LIQYITCHGE GRWNSLAKSS GLKRTGKSCR LRWLNYLKPD  180
VKHGNLSPQE QLLILELHSK WGNRWSKIAQ QLPGRTDNEI KNYWRTKVQK QARYLKIDSN  240
SKKFVEALKQ FWLPRLLEKV EQSSPSSSST STTTMDAYQK NLSHQALSNE TLMENTYSSS  300
SICSLNSTKI VLPYLPESTI QSNGYFVDNN NFDAMSFNHL NMQESRYSDM SALDFQLAEV  360
DWMNNELVDD TFWNMDELWQ FRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	2e-82	MYB family protein