PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000187.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 884aa    MW: 98466.1 Da    PI: 4.913
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000187.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.8e-182975148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+++Ede+l +av+q+ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Cse_sc000187.1_g020.1 29 KGQWSAQEDEILCKAVQQFNGKNWKKIAECFK-DRTDVQCLHRWQKVL 75
                           799****************************9.************986 PP
2Myb_DNA-binding61.41.8e-1981127148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+W++eEd++++++v+q+G + W+tIa+ ++ gR +kqc++rw+++l
  Cse_sc000187.1_g020.1  81 KGPWSKEEDDIIIRLVEQYGAKKWSTIAQNLP-GRIGKQCRERWHNHL 127
                            79******************************.*************97 PP
3Myb_DNA-binding44.83e-14133175145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            + +W++eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
  Cse_sc000187.1_g020.1 133 KEAWSQEEELALIHAHQVYGNK-WAELTKFLP-GRSDNAIKNHWN 175
                            579*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    
MSDVLLTKRR DKMPNLNGRT TGPTRRSTKG QWSAQEDEIL CKAVQQFNGK NWKKIAECFK  60
DRTDVQCLHR WQKVLNPELV KGPWSKEEDD IIIRLVEQYG AKKWSTIAQN LPGRIGKQCR  120
ERWHNHLNPN INKEAWSQEE ELALIHAHQV YGNKWAELTK FLPGRSDNAI KNHWNSSVKK  180
KLDTYLQNGM LAQSQLLPQV SQTNHQSTPS TSSWVQQGSG DVLEAEDISE CSQGVGNAIA  240
VYPKNEESHH HLPESCFSHD WVTEEKDWHI SNELHSQDIS KEEPDFISCI DVGEPILSSG  300
GNMVAVGGCD MTDEHMLLSS QKFYNSSNQV DGSSELVPND GASASSTNLN SQSYYSDLLL  360
TSCYQSMYMP LDSAFNDSGN TSNVYDGQET AVRSQNQNEQ VNDSMEVVVP TDVLSLPQVN  420
DMKTVDVSQT QEQQKQQDND DNDKDKGVLS YDPPRFPSLD IPFFSCDLAQ YGGSSDMQHE  480
YSPLGIRKLM MSSMNCFSPY RLWDSPSRAD SPEAVLKNAA KSFTSTPSIL NKKRNRDLCS  540
PSAFSPLSDK RCEKKLERSS FSNLAKDFSR LEVVMFDDEK HSPSSSDSGQ FLEDKENMNP  600
APDAVQGMEN EGVDGTMLKD YSFQTCQVRV STGILTERNM DNLSFFSPDK ITKKPETPSK  660
GPNSGEKSSK CLQVPSNQVT TNKSESPPNG SNPCESIVSP RTIIGNKSES FLVASSSSHI  720
NAENDTCIET SLGIFGETPF KRSFESPSAW KSPWFSFMPG PRVDTEITID DIGYYVSPRE  780
RSYDALGLMR QLSEHTATAY ATAQEVLGDE TPDSLVNKRY AERTSQQSNL VTERRVLDFS  840
ECGSPAKGSA ETARHCNLIF SSSPPMTSTK GGCLSLSACF EDIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-107MYB family protein