PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000143.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 755aa MW: 86910.2 Da PI: 9.0643

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000143.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.2	3.2e-19	42	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkw 76 +fY++YAk GF+vrks+++ + ++g+ +++ vCs+eg++ + + ke+r+r++ r+gC ak + ++++++ Cse_sc000143.1_g010.1 42 QFYKTYAKLSGFEVRKSTHYIT-KDGKLKQKYIVCSREGFKPIAPMDtlvdnidkqenkKPKEKRKRPSCRCGCLAKCIFEITNENNY 128 6*****************99.7788**********99999999*99988888999******************* PP FAR1 77 evtkleleHnHela 90 +v+ +++eHnH+++ Cse_sc000143.1_g010.1 129 VVHVFDEEHNHPFV 142 *********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence
MKKSLGIVRV AEDGKRFYKP DVSDDVKPFK GKLFKTLEDG FQFYKTYAKL SGFEVRKSTH 60 YITKDGKLKQ KYIVCSREGF KPIAPMDTLV DNIDKQENKK PKEKRKRPSC RCGCLAKCIF 120 EITNENNYVV HVFDEEHNHP FVDEDDIPLL KSSRKLTFSK KQLLFRVLNN NIGPMKAFKM 180 MKELFGGFDE IGATSLLFRV LNNNIGPMKA FKMMKELFGG IDEIGATSVD CKNFKRGINL 240 FIGEFDAEMV VELLMNKKEY IHGFSCDYFT NEDGALAGLF WADEVAKNNY LCFGDVISFD 300 ATFRSNKYKM VFVPFTGIDN HHHSVTFAAA LLSKETSESY GWLLRAFKKA FGSEPKVVVT 360 DQDPAMKIAI EKEFKNSRHR LCMWHIMEKL STKVGPVICK NKTFKRRICD IVWTDTIEPS 420 EFEREWESII NDFELQSNNW LRDMFSLKTS TTLTLVEFVS HFETAMDVQR YTHRTNQHKT 480 RYTTPDLFTD YVLEKQACEI YTRAIFYDIQ DEICASITDC MSMSVMAIDG SHKFCIKEIG 540 PDATSQGLFE VLFTPSDVTL SCSCKRFERY GLLCRHSFYV LRICGVNEFP KKYVLKRWTR 600 NAVTPVKRAV FDARNKLSDG SVRDEIVKDI IGSVEYCVDK LASSIKELAI YRDRLQDLKS 660 KIDAELPNQR PMTDREVISS AIGVSKPSKT HIKNPLQGRR KGDRANSRII PPKERAMTDG 720 AKKARQCKKC GDQDADHDSR NCTKFQQKKR NMPDV

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence

MKKSLGIVRV AEDGKRFYKP DVSDDVKPFK GKLFKTLEDG FQFYKTYAKL SGFEVRKSTH  60
YITKDGKLKQ KYIVCSREGF KPIAPMDTLV DNIDKQENKK PKEKRKRPSC RCGCLAKCIF  120
EITNENNYVV HVFDEEHNHP FVDEDDIPLL KSSRKLTFSK KQLLFRVLNN NIGPMKAFKM  180
MKELFGGFDE IGATSLLFRV LNNNIGPMKA FKMMKELFGG IDEIGATSVD CKNFKRGINL  240
FIGEFDAEMV VELLMNKKEY IHGFSCDYFT NEDGALAGLF WADEVAKNNY LCFGDVISFD  300
ATFRSNKYKM VFVPFTGIDN HHHSVTFAAA LLSKETSESY GWLLRAFKKA FGSEPKVVVT  360
DQDPAMKIAI EKEFKNSRHR LCMWHIMEKL STKVGPVICK NKTFKRRICD IVWTDTIEPS  420
EFEREWESII NDFELQSNNW LRDMFSLKTS TTLTLVEFVS HFETAMDVQR YTHRTNQHKT  480
RYTTPDLFTD YVLEKQACEI YTRAIFYDIQ DEICASITDC MSMSVMAIDG SHKFCIKEIG  540
PDATSQGLFE VLFTPSDVTL SCSCKRFERY GLLCRHSFYV LRICGVNEFP KKYVLKRWTR  600
NAVTPVKRAV FDARNKLSDG SVRDEIVKDI IGSVEYCVDK LASSIKELAI YRDRLQDLKS  660
KIDAELPNQR PMTDREVISS AIGVSKPSKT HIKNPLQGRR KGDRANSRII PPKERAMTDG  720
AKKARQCKKC GDQDADHDSR NCTKFQQKKR NMPDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-76	FAR1 family protein