PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000113.1_g150.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 491aa    MW: 55517.7 Da    PI: 4.4531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000113.1_g150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS143.22.6e-441364902373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL + A+a+s ++++la+ ++  +se  ++ g +++R+ + + ++  ++ ++        l+ ++       + ++a+++f++++P
  Cse_sc000113.1_g150.1 136 KNLLKAWADAISLEQKQLADVIVRCISEKINSIGAAIERISFNLFQGGDNQGNE-------YLKQEA-----FRNFMQAFSAFYKIFP 211
                            6899999****************************************9999988.......233333.....5688899999****** PP

                   GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            + +f+h+taN+aIl+av  + e vHi+Dfdi +G QWp  ++a+a++     sl iT v+++e  +    eet+++L ++A+++g+++
  Cse_sc000113.1_g150.1 212 YGQFAHFTANSAILQAVLAHvESVHIVDFDICEGSQWPVVIEAIAQQ---RKSLTITSVKHEE--HGFGFEETKRNLINYARTCGLNL 294
                            ****************99998************************96...457********66..99*******************99 PP

                   GRAS 177 efnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvks...lsPkvvvvveqeadh...nsesFler 256
                            +  v ++k+++++ ++e++ ++  gE l+ n+++ l ++ + + + +    ++L++ k    ++  ++++ + e       +++F   
  Cse_sc000113.1_g150.1 295 K--V-LEKDVTQM-MQEIEGQRkgGEFLVFNCMVGLPHMGKTRKTAQ--VANFLSIAKAalaTNEGIITFGDGEGHErmeKASDFSSL 376
                            7..4.35666666.7888777778***************84444444..58899988853226888******996543346779**** PP

                   GRAS 257 flealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                            f  +l ++ al++s++ ++p++  e+r+++E  ++++ i++    ++ e + r++     +   +  G+k  p+s +  ++a+ l+++
  Cse_sc000113.1_g150.1 377 FDGKLAHCKALYESMDWGFPSHLtEARMTMETLFIAPFISSNSWLQKWE-EGREN-----KVSQSIIGLKGRPMSIESLNEARELVKQ 458
                            *******************998779********9999998877777666.33333.....3444679********************* PP

                   GRAS 344 vk.sdgyrveee.sgslvlgWkdrpLvsvSaW 373
                             +   g rv+ +  +++vl W++ p+v vS+W
  Cse_sc000113.1_g150.1 459 AEsPYGIRVQGDcGNEMVLEWNGTPIVKVSVW 490
                            **8889999966588999************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    
MMQSEVLIQT PWQIQSYFHS NLDHYESEHH EFLSSINSSP EYSLISSESY LPVLIDECVD  60
YPFLGNDQTQ NFSPDETDLQ KMMVLDDVCK WLCDDDQVAE EIQSETSVQG EDVWSPCLSI  120
EELNDVMEPE FQTGLKNLLK AWADAISLEQ KQLADVIVRC ISEKINSIGA AIERISFNLF  180
QGGDNQGNEY LKQEAFRNFM QAFSAFYKIF PYGQFAHFTA NSAILQAVLA HVESVHIVDF  240
DICEGSQWPV VIEAIAQQRK SLTITSVKHE EHGFGFEETK RNLINYARTC GLNLKVLEKD  300
VTQMMQEIEG QRKGGEFLVF NCMVGLPHMG KTRKTAQVAN FLSIAKAALA TNEGIITFGD  360
GEGHERMEKA SDFSSLFDGK LAHCKALYES MDWGFPSHLT EARMTMETLF IAPFISSNSW  420
LQKWEEGREN KVSQSIIGLK GRPMSIESLN EARELVKQAE SPYGIRVQGD CGNEMVLEWN  480
GTPIVKVSVW V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-17GRAS family protein