PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000113.1_g080.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 471aa    MW: 53774.4 Da    PI: 4.645
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000113.1_g080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS145.35.8e-451164712374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL++  +a+ +++ ela+ + + +s+ a+p+g+p++R+++++ +  +++        y     +++   +  + + a+++f+ ++P
  Cse_sc000113.1_g080.1 116 ENLLMAYTDAMGAEHEELAEVIAKCISKKANPNGSPLERIVFHLFQPEEHQEEA-----Y----LKHE---SARNFIPAFRAFYSIFP 191
                            689***************************************988765544333.....2....2222...357899*********** PP

                   GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            + +f+h+ta +aI eav  + + vHi+Dfdi +G+QWp+ ++a+a     + sl iT v+  ++++  + +et+++L++fA+++g+++
  Cse_sc000113.1_g080.1 192 YGRFAHFTACSAIIEAVPCHvDVVHIVDFDICEGAQWPPVIEAIARI---KKSLIITSVKL-DQDQDSQFQETKRNLSNFARAIGLNL 275
                            ******************998999********************974...458*******9.668999******************** PP

                   GRAS 177 efnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...vvvvveqeadh..nsesFlerf 257
                            + + +         l+e++ +    E +a n+++ l ++ + + +++    ++Lk+ k++ +k   ++++   e ++  n++ +   f
  Cse_sc000113.1_g080.1 276 KVQEI--------GLQEMEERAsgSEFTAFNCMVGLPHMGRTRNQTQ--VMDFLKIAKGVLAKtegIITFGAGEEERitNDSYYTSFF 353
                            99986........44444444444***************95444444..599********9986668998755554443888888888 PP

                   GRAS 258 lealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrk 343
                             + l +y al++s+e ++p+   e+ri +E  +l++ +++    ++ e   ++e+ +     +++ +G+k  ++s +  ++ak l+++
  Cse_sc000113.1_g080.1 354 NKLLAHYQALYESMEWGFPSYLnEARIAMETLFLAPFVSSNSWFQTWE---EQEENMVFDVNFQKdVGLKGQRMSMESWNEAKELVKE 438
                            8899**************9975599***********999888888777...555566667777655********************** PP

                   GRAS 344 vksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                             +   y+++ e    +++vl Wk+ +Lv v aW+
  Cse_sc000113.1_g080.1 439 GETP-YKIQVEggnGNEMVLQWKETTLVRVYAWK 471
                            9966.9999554548899***************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MALLQSSWPS NSHFHSNVDR YDTKMELYAS DHHEHSSSIT TITHENSSSV SSVYLPMLSN  60
DYDHGHYGMD KSLVNIEGLD DVCKWLCDDV KDQGMDESSI CVHDDAMEMD SQTRIENLLM  120
AYTDAMGAEH EELAEVIAKC ISKKANPNGS PLERIVFHLF QPEEHQEEAY LKHESARNFI  180
PAFRAFYSIF PYGRFAHFTA CSAIIEAVPC HVDVVHIVDF DICEGAQWPP VIEAIARIKK  240
SLIITSVKLD QDQDSQFQET KRNLSNFARA IGLNLKVQEI GLQEMEERAS GSEFTAFNCM  300
VGLPHMGRTR NQTQVMDFLK IAKGVLAKTE GIITFGAGEE ERITNDSYYT SFFNKLLAHY  360
QALYESMEWG FPSYLNEARI AMETLFLAPF VSSNSWFQTW EEQEENMVFD VNFQKDVGLK  420
GQRMSMESWN EAKELVKEGE TPYKIQVEGG NGNEMVLQWK ETTLVRVYAW K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.17e-19GRAS family protein