PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000111.1_g180.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 472aa MW: 54910.8 Da PI: 9.1647

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000111.1_g180.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.9	2.1e-15	94	200	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkk 70 ++Y eYA ++ Fs+rks+sk++ + e+t++ vC++ gk++++ k + +++r+++ t t+Ck +++ + Cse_sc000111.1_g180.1 94 DMYLEYAFKARFSIRKSTSKRK--KSEVTHKYIVCNRAGKPRKTIVKdtlaqssqtvdnqkdgvnKPRQKRNSNYTVTNCKTCVTFRA 179 58*************99988..7779**********9988889**********9877888899999******** PP FAR1 71 ek.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc000111.1_g180.1 180 IHgTSPFKLYEFVENHNHPLL 200 99***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MNSSIGNHDQ EKVNVPVVSP MQTEANVHIQ SPINDEQVNF NEDFSSEYSD LDDSESDDEC 60 IPTPKGHKYW VPEVPADEKP SEGNVFDTFD KAYDMYLEYA FKARFSIRKS TSKRKKSEVT 120 HKYIVCNRAG KPRKTIVKDT LAQSSQTVDN QKDGVNKPRQ KRNSNYTVTN CKTCVTFRAI 180 HGTSPFKLYE FVENHNHPLL DENNTDLLKA RRKLDFSDRL FIHRSSLSNL GPTKAHRLRV 240 AFMGSYQKVR GKPSDWKNFR RYRMIFIPFT RIDHNKKCVT FGAALIGDET IESYKWILTS 300 FKKAHVKEPI LVVTDQNPAL RSVVEALFPE AHHRLCMWHI TQKLPGKICG EVDSDSEFKK 360 LFHKLIWNVF IEPSEFEERW HALIGMFNLS ENKWLSEMFK MRDLWIPAYF KELPMCCLIK 420 TTSRSESSNA FFRIFSHSGN MLVHSCFALK PLWRNNIMCN VSWTISLLKL LQ

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MNSSIGNHDQ EKVNVPVVSP MQTEANVHIQ SPINDEQVNF NEDFSSEYSD LDDSESDDEC  60
IPTPKGHKYW VPEVPADEKP SEGNVFDTFD KAYDMYLEYA FKARFSIRKS TSKRKKSEVT  120
HKYIVCNRAG KPRKTIVKDT LAQSSQTVDN QKDGVNKPRQ KRNSNYTVTN CKTCVTFRAI  180
HGTSPFKLYE FVENHNHPLL DENNTDLLKA RRKLDFSDRL FIHRSSLSNL GPTKAHRLRV  240
AFMGSYQKVR GKPSDWKNFR RYRMIFIPFT RIDHNKKCVT FGAALIGDET IESYKWILTS  300
FKKAHVKEPI LVVTDQNPAL RSVVEALFPE AHHRLCMWHI TQKLPGKICG EVDSDSEFKK  360
LFHKLIWNVF IEPSEFEERW HALIGMFNLS ENKWLSEMFK MRDLWIPAYF KELPMCCLIK  420
TTSRSESSNA FFRIFSHSGN MLVHSCFALK PLWRNNIMCN VSWTISLLKL LQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	138	KRKKSEVTHKYIVCNRAGKPRKTIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-25	FAR1 family protein