PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000096.1_g120.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 515aa MW: 57775.7 Da PI: 6.7179

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000096.1_g120.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	139	184	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++N+ f +L ++lPk+ K++Ka++Le A +YIk+L+ Cse_sc000096.1_g120.1 139 HVLAERKRREKLNQNFITLSSVLPKL-----MKMDKASMLEDASNYIKELE 184 8899*******************9.....7**************996 PP
2	HLH	13.4	0.00014	356	379	33	55
.TTS-.STCHHHHHHHHHHHHHHH CS HLH 33 apskK.lsKaeiLekAveYIksLq 55 ++k+ ++Ka++Le A +YIk+L+ Cse_sc000096.1_g120.1 356 KGKKRmMDKASMLEDASNYIKELE 379 234447***************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MDMSQGWLAE LEMEDPGYMS CDEMNILNYD IDNFSLDSIY SQIYTEKTTN INQTSQTRQS 60 EVNNPSYQEK SSSTINKIST TPETLISTNL PSSKTFTISF GELKQKDEPF QFHDLLGYET 120 AHTTKVSVAL RNPIQAHDHV LAERKRREKL NQNFITLSSV LPKLMKMDKA SMLEDASNYI 180 KELEGRVKEL EGTLENNKRK NVDQESVISV KRSRPSSRDD EYYLRDEPST SGESTAPCKT 240 TLEIKACRLG NTLTVSIQCQ INHSPFIKAL TQMQKLGLSI ISSSSMPFAK NHLLMTIVAQ 300 IADDFSMTTT ELMAKLAFDA RVQVLGLPNK VTCDKLGIKP FAVKTTETAV DTPKGKGKKR 360 MMDKASMLED ASNYIKELEG RVKELEGTLE NNKRTNVDQE SVISVKRYRP SSSDDEYYLR 420 YEPATSGEST APCKTTPEIK ACRLANTLTV SIECQKNHSS FIKALTQMQK LGLSIISSSS 480 MPFAKSHLLI TIVAQIVDDF SMTTTELVKN LQQSI

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MDMSQGWLAE LEMEDPGYMS CDEMNILNYD IDNFSLDSIY SQIYTEKTTN INQTSQTRQS  60
EVNNPSYQEK SSSTINKIST TPETLISTNL PSSKTFTISF GELKQKDEPF QFHDLLGYET  120
AHTTKVSVAL RNPIQAHDHV LAERKRREKL NQNFITLSSV LPKLMKMDKA SMLEDASNYI  180
KELEGRVKEL EGTLENNKRK NVDQESVISV KRSRPSSRDD EYYLRDEPST SGESTAPCKT  240
TLEIKACRLG NTLTVSIQCQ INHSPFIKAL TQMQKLGLSI ISSSSMPFAK NHLLMTIVAQ  300
IADDFSMTTT ELMAKLAFDA RVQVLGLPNK VTCDKLGIKP FAVKTTETAV DTPKGKGKKR  360
MMDKASMLED ASNYIKELEG RVKELEGTLE NNKRTNVDQE SVISVKRYRP SSSDDEYYLR  420
YEPATSGEST APCKTTPEIK ACRLANTLTV SIECQKNHSS FIKALTQMQK LGLSIISSSS  480
MPFAKSHLLI TIVAQIVDDF SMTTTELVKN LQQSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	148	ERKRRE
2	144	149	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	2e-24	bHLH family protein