PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000096.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 266aa MW: 30023.4 Da PI: 9.48

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000096.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.5e-13	106	153	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++N+ f +L +lPk+ +K++Ka++Le A +YIk+L+ Cse_sc000096.1_g090.1 106 QDHVLAERKRREKLNQNFITLSNVLPKL-----TKMDKASMLEDASNYIKELE 153 56999********************9.....9**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MDMSQGWLAE LEFLQRSILP DRDGYVTRMA SRTAPIPTNL PSSKTFTISF GDLKPKDEPF 60 QFHDLLGDEA AAHTTKVSVA LRNTIQAQDH VLAERKRREK NTIQAQDHVL AERKRREKLN 120 QNFITLSNVL PKLTKMDKAS MLEDASNYIK ELEGRVKELE GTLENNKRKN VDQESRPLER 180 ASTAPCKTTP EIKACRLANT LTVSIECQKN HSSFIKALTQ MQKLGLSIIS SSSMPFAKSH 240 LLITIVAQIV DDFSMTTTEL VKNLQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	99	ERKRRE
2	95	100	RKRREK
3	95	116	RKRREKNTIQAQDHVLAERKRR
4	96	117	RKRREKNTIQAQDHVLAERKRR
5	112	117	ERKRRE
6	113	118	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	7e-27	bHLH family protein