PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000096.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 306aa MW: 34388.7 Da PI: 5.9212

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000096.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.4e-12	75	121	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er+RR+++N+ + llP++ kK++Ka++Le A +Y+++Lq Cse_sc000096.1_g070.1 75 SHVLAERKRREKLNQQIISMSALLPNL-----KKMDKASVLEDAANYLRELQ 121 6899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MDFSSMWLPE LEPEDGGFMT QYDNMRNPYN MVDSFSSEYI QEKESSIQRF FPYQTANTLA 60 ISFGDIKANE EIPPSHVLAE RKRREKLNQQ IISMSALLPN LKKMDKASVL EDAANYLREL 120 QDRVKELEAL SGPKRKENDS SSNETNSGDH SAGVPSKSCA ENEIQVRISG GSVLVRIYSH 180 KTYSLTVKVL SEMQRLGFNI ISSSTMPFAN TITVITILAQ ITKSSEHIQG RTLGMAMQTS 240 CQPYEGPSSI KLQNKFEGTN SILTTRISHE LCNTSGNNPY DYQLRIALSC STEVHYIHDT 300 YLVSQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	85	ERKRRE
2	81	86	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	8e-27	bHLH family protein