PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000082.1_g120.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 1059aa    MW: 119198 Da    PI: 6.8808
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000082.1_g120.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.2e-23147248199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv++++L +gD v+F
  Cse_sc000082.1_g120.1 147 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDQSWTFRHIYRGQPKRHLLTTGWSIFVSSKRLFAGDAVLF 233
                            99*****************************9445444.38*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++ +l+++++r+
  Cse_sc000082.1_g120.1 234 V--RDEKSQLLLGIRRA 248
                            *..4567778**99997 PP
2Auxin_resp122.82.4e-40273355183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+++YnPras++eFv++++k++ka++ +vs+GmRf+m+fete+s  rr++Gtv+g+sd+dpvrW+nS+WrsL+
  Cse_sc000082.1_g120.1 273 AAHAAANNSPFTIFYNPRASPTEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTVTGISDTDPVRWKNSQWRSLQ 355
                            79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1059 aa     Download sequence    
MKAPTPNINS NGNGGYHQTN LTTTAAAALE QQQQQGAKKL MNSELWHACA GPMVSLPPVG  60
SLVVYFPQGH SEQVAASMQK DTHNIPSYPN LPSKLICMLH NVTLHADAET DEVYAQMTLQ  120
PVNKYDQEAL LISDMGLKQN RQPSEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM  180
QPPAQELVAR DLHDQSWTFR HIYRGQPKRH LLTTGWSIFV SSKRLFAGDA VLFVRDEKSQ  240
LLLGIRRANR QQSALSSSVI SSDSMHIGIL AAAAHAAANN SPFTIFYNPR ASPTEFVIPL  300
AKYNKAMYAQ VSLGMRFRMM FETEESGVRR YMGTVTGISD TDPVRWKNSQ WRSLQVGWDE  360
SAAGERPSRV SIWEIEPVVT PFYMCPPPFF RQKFPQQPGM LLDSDSEIEN AYKRGMTMPW  420
LEDMQGMKDG SNSIFPGMSL VQWMSMQQQN HAGFPHSINS SLNFEDPSKL LSFQSPPQSN  480
KLNQKNQPVT PLQQLSPPWP QQHQLLHPAN VNQQQQQQLY QQPNSVYNQL QQQLQQQQQQ  540
QQQQQQHQQQ QQQQQQQQQQ HQQQQQQQQQ QQQQHQQQQQ QQQQHQQNQQ LLQQQKPQSL  600
QISGNTQPQQ ISGSASRTSF NSLPMSQHQT EQQQLQHNLS LRQQSLSEQQ QTLQILQKLQ  660
QQQQQQQHQF FSPTSHVETQ LPPLQHQVLS QIQQLKNQQQ QLSSNSLSTS TLVQSPHFQS  720
NQQQSQYKPI RVNPGITDVD PPSCSTSPST NNCQVTPSNF LAKNQQPLSV LGDVQSQIRS  780
DTRVKHELSN LKVPDQTKDK AIATEPATSV TSYSLDAAGL PHNFSIPNFS LEGDGVQSQP  840
RSDLPFGANL ESLPPDALLS RGFDSQNLMS NYVGGHRDIE TELSAADISP QSFGMPADMS  900
FKPGCSNDNI AAKDANGVLG NGLWGNQTQR MRTYTKVQKR GSVGRTIDVT RYKGYEELRH  960
DLARMFGIEG QLEDAQRMEW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSYSEVQKM  1020
SLDGDLGNVP VPNPASSGTD SGNPWRAAYD DNSAASFNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein